View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10331_high_4 (Length: 288)

Name: NF10331_high_4
Description: NF10331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10331_high_4
NF10331_high_4
[»] chr1 (9 HSPs)
chr1 (158-275)||(8924889-8925006)
chr1 (158-272)||(9359406-9359520)
chr1 (158-271)||(8936534-8936647)
chr1 (158-275)||(9335665-9335782)
chr1 (158-271)||(8960055-8960168)
chr1 (188-275)||(9475207-9475294)
chr1 (166-264)||(9306728-9306826)
chr1 (202-275)||(8946024-8946097)
chr1 (203-272)||(9244985-9245054)
[»] chr6 (1 HSPs)
chr6 (188-268)||(15912698-15912778)
[»] chr3 (1 HSPs)
chr3 (158-272)||(9168560-9168674)


Alignment Details
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 158 - 275
Target Start/End: Complemental strand, 8925006 - 8924889
Alignment:
Q  158 catcaagcatgtgatgcaattacaaatagcaataaccaaacatattgtccaccttcttcatgcggcaaaatcacaaatataaaatatccatttcgactta 257  Q
    |||||| |||||||||||||||||||||  | |||||||||||||||||||||||||||||| ||||||||||  || ||||||||||| ||||||||||    
T  8925006 catcaaacatgtgatgcaattacaaatactagtaaccaaacatattgtccaccttcttcatgtggcaaaatcaacaacataaaatatccgtttcgactta 8924907  T
Q  258 agaatgacccaacaacct 275  Q
    ||||||| ||||||||||    
T  8924906 agaatgatccaacaacct 8924889  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 158 - 272
Target Start/End: Complemental strand, 9359520 - 9359406
Alignment:
Q  158 catcaagcatgtgatgcaattacaaatagcaataaccaaacatattgtccaccttcttcatgcggcaaaatcacaaatataaaatatccatttcgactta 257  Q
    |||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||  | |||| ||||||||||    
T  9359520 catcaaacatgtgatgcaattactaatacaaataaccaaacatattgtccaccttcttcatgcggcaaaatcacaaacatatcacatccttttcgactta 9359421  T
Q  258 agaatgacccaacaa 272  Q
     ||||||||||||||    
T  9359420 tgaatgacccaacaa 9359406  T

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Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 158 - 271
Target Start/End: Complemental strand, 8936647 - 8936534
Alignment:
Q  158 catcaagcatgtgatgcaattacaaatagcaataaccaaacatattgtccaccttcttcatgcggcaaaatcacaaatataaaatatccatttcgactta 257  Q
    |||||| |||||||||||||||||||||  | |||||||||||  |||||||||||||||||||||||||||||||| |||| | |||||||||||||||    
T  8936647 catcaaacatgtgatgcaattacaaatactagtaaccaaacattctgtccaccttcttcatgcggcaaaatcacaaacataacacatccatttcgactta 8936548  T
Q  258 agaatgacccaaca 271  Q
    || |||| ||||||    
T  8936547 aggatgatccaaca 8936534  T

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Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 158 - 275
Target Start/End: Complemental strand, 9335782 - 9335665
Alignment:
Q  158 catcaagcatgtgatgcaattacaaatagcaataaccaaacatattgtccaccttcttcatgcggcaaaatcacaaatataaaatatccatttcgactta 257  Q
    |||||| |||||||||||||||| ||||  |||||| ||||||||||||||||||||||||||||||||||||  || || ||| |||| ||||||||||    
T  9335782 catcaaacatgtgatgcaattactaatacaaataacaaaacatattgtccaccttcttcatgcggcaaaatcagcaacatcaaacatccgtttcgactta 9335683  T
Q  258 agaatgacccaacaacct 275  Q
    ||||||||||| ||||||    
T  9335682 agaatgacccagcaacct 9335665  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 158 - 271
Target Start/End: Complemental strand, 8960168 - 8960055
Alignment:
Q  158 catcaagcatgtgatgcaattacaaatagcaataaccaaacatattgtccaccttcttcatgcggcaaaatcacaaatataaaatatccatttcgactta 257  Q
    |||||| |||||||||||||||||||||  | |||||||||||||||||||||||||||||| ||||||||   ||| |||  | |||| ||||||||||    
T  8960168 catcaaacatgtgatgcaattacaaatactagtaaccaaacatattgtccaccttcttcatgtggcaaaattggaaacatatcacatccttttcgactta 8960069  T
Q  258 agaatgacccaaca 271  Q
    || |||||||||||    
T  8960068 aggatgacccaaca 8960055  T

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Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 188 - 275
Target Start/End: Original strand, 9475207 - 9475294
Alignment:
Q  188 aataaccaaacatattgtccaccttcttcatgcggcaaaatcacaaatataaaatatccatttcgacttaagaatgacccaacaacct 275  Q
    |||||||||||| ||||||||||||||||||| |||||| ||||||| |||||| |||| |||||||| |||||||| ||||||||||    
T  9475207 aataaccaaacaaattgtccaccttcttcatgtggcaaactcacaaacataaaacatccgtttcgactcaagaatgatccaacaacct 9475294  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 264
Target Start/End: Original strand, 9306728 - 9306826
Alignment:
Q  166 atgtgatgcaattacaaatagcaataaccaaacatattgtccaccttcttcatgcggcaaaatcacaaatataaaatatccatttcgacttaagaatga 264  Q
    |||| |||||||||| | ||  ||||||||||||||||||||| | || ||||| |||| ||||| ||| |||||| |||| ||||||||| |||||||    
T  9306728 atgttatgcaattactattactaataaccaaacatattgtccatcctcatcatgtggcacaatcagaaacataaaacatccttttcgacttcagaatga 9306826  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 8946097 - 8946024
Alignment:
Q  202 ttgtccaccttcttcatgcggcaaaatcacaaatataaaatatccatttcgacttaagaatgacccaacaacct 275  Q
    |||||| ||||||||||| ||||||||||  || ||||| ||||| || |||||||||||||| ||| ||||||    
T  8946097 ttgtcccccttcttcatgtggcaaaatcagcaacataaagtatcccttccgacttaagaatgatccagcaacct 8946024  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 9244985 - 9245054
Alignment:
Q  203 tgtccaccttcttcatgcggcaaaatcacaaatataaaatatccatttcgacttaagaatgacccaacaa 272  Q
    ||||||||||||||||| || |||||||  || || ||| |||| |||||||||| ||||||||||||||    
T  9244985 tgtccaccttcttcatgtggaaaaatcagcaacatcaaacatccgtttcgacttatgaatgacccaacaa 9245054  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 188 - 268
Target Start/End: Original strand, 15912698 - 15912778
Alignment:
Q  188 aataaccaaacatattgtccaccttcttcatgcggcaaaatcacaaatataaaatatccatttcgacttaagaatgaccca 268  Q
    |||||| |||||| ||||||| ||||||||||||| |||||||  || |||||| ||||||||||||||||||||||||||    
T  15912698 aataacaaaacattttgtccaacttcttcatgcggtaaaatcagcaacataaaacatccatttcgacttaagaatgaccca 15912778  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 158 - 272
Target Start/End: Complemental strand, 9168674 - 9168560
Alignment:
Q  158 catcaagcatgtgatgcaattacaaatagcaataaccaaacatattgtccaccttcttcatgcggcaaaatcacaaatataaaatatccatttcgactta 257  Q
    ||||||||||||||||||| ||  |||||  ||||||||| ||  ||||||||||||||||| |||||||| | ||| |||||| |||| || |||||||    
T  9168674 catcaagcatgtgatgcaactagtaatagtgataaccaaaaattatgtccaccttcttcatgtggcaaaatgagaaacataaaacatccgttccgactta 9168575  T
Q  258 agaatgacccaacaa 272  Q
    | ||||| |||||||    
T  9168574 aaaatgatccaacaa 9168560  T

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