View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10331_high_5 (Length: 240)
Name: NF10331_high_5
Description: NF10331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10331_high_5 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 42654686 - 42654464
Alignment:
| Q |
18 |
aagggtgcaacctcaaattttcaggggattcaaagttgaaattggaaagatttgtaggtgtaattttaagaacccagggggttcagctgcatcccctgag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42654686 |
aagggtgcaacctcaaattttcaggggattcaaagttgaaattggaaagatttgtaggtgtaattttaagaacccagggggttcagctgcatcccctgag |
42654587 |
T |
|
| Q |
118 |
atgcatgtaactccgccaatgattatatggatgacaacttttaccaatatatagctagtgctaaccaatgaggcaggtttacataggatcataatcatat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42654586 |
atgcatgtaactccgccaatgattatatggatgacaacttttaccaatatatagctagtgctaaccaatgaggcaggtttacataggatcataatcatat |
42654487 |
T |
|
| Q |
218 |
acttctatctattacttcatttt |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
42654486 |
acttctatctattacttcatttt |
42654464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 36389481 - 36389365
Alignment:
| Q |
22 |
gtgcaacctcaaattttcaggggattcaaagttgaaattggaaagatttgtaggtgtaattttaagaacccagggggttcagctgcatcccctgagatgc |
121 |
Q |
| |
|
|||||| || |||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||||| ||||||||||||| || ||| |
|
|
| T |
36389481 |
gtgcaaacttaaattttcaggggatttaaagttgaaattagaaagatttgttggtgtaattttaagaacccatggggttgagctgcatcccctaaggtgc |
36389382 |
T |
|
| Q |
122 |
atgtaactccgccaatg |
138 |
Q |
| |
|
||| | ||||||||||| |
|
|
| T |
36389381 |
atgcagctccgccaatg |
36389365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 10148003 - 10148123
Alignment:
| Q |
18 |
aagggtgcaacctcaaattttcaggggattcaaagttgaaattggaaagatttgtaggtgtaattttaagaacccagggggttcagctgcatcccctgag |
117 |
Q |
| |
|
|||||||||| || |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10148003 |
aagggtgcaaacttaaatttccaggggattcaaagttgaaattgaaaagatttgtaggtgtaattttaagaacccagggggttcagctgcatcccctgag |
10148102 |
T |
|
| Q |
118 |
atgcatgtaactccgccaatg |
138 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
10148103 |
atgcatgtagctccgccaatg |
10148123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 30880745 - 30880865
Alignment:
| Q |
18 |
aagggtgcaacctcaaattttcaggggattcaaagttgaaattggaaagatttgtaggtgtaattttaagaacccagggggttcagctgcatcccctgag |
117 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| |
|
|
| T |
30880745 |
aagggtgcaaactcaaattttcaggaaattcaaagttgaaattggaaagatttgtaggtgtaattttaagaacctagggggttcagctacgtcccctgag |
30880844 |
T |
|
| Q |
118 |
atgcatgtaactccgccaatg |
138 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
30880845 |
atgcatgtagctccgccaatg |
30880865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 29377637 - 29377757
Alignment:
| Q |
18 |
aagggtgcaacctcaaattttcaggggattcaaagttgaaattggaaagatttgtaggtgtaattttaagaacccagggggttcagctgcatcccctgag |
117 |
Q |
| |
|
|||||||||| || |||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||| |||||||||||||| |
|
|
| T |
29377637 |
aagggtgcaaacttaaatttccaggggattcaaagttgaaattgaaaagatttgtaggtgtaattttaataacccaaggggttcaactgcatcccctgag |
29377736 |
T |
|
| Q |
118 |
atgcatgtaactccgccaatg |
138 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
29377737 |
atgcatgtagctccgccaatg |
29377757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 39623709 - 39623786
Alignment:
| Q |
33 |
aattttcaggggattcaaagttgaaattggaaagatttgtaggtgtaattttaagaacccagggggttcagctgcatc |
110 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39623709 |
aattttcaggggattcaaaattgaatttggatagattagtaggtgtaattttaagaacccagggggttcagctgcatc |
39623786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University