View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10331_low_7 (Length: 229)
Name: NF10331_low_7
Description: NF10331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10331_low_7 |
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| [»] scaffold0815 (1 HSPs) |
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Alignment Details
Target: scaffold0815 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0815
Description:
Target: scaffold0815; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 926 - 696
Alignment:
| Q |
1 |
attggtgttatatgcgttttgctatcagtgcggattttctttgatacttcgagtcttagtgccgtgaatatacacatataactattatgagactaacatc |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
926 |
attggtgttatatgcgttttgctatcagtggggattttctttgatacttggagtcttagtgccgtgaatatacacatataactattatgagactaacatc |
827 |
T |
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| Q |
101 |
ttaatcatgcagctaattagttaaagtttttattcatggctcttaatgaagatcaattatcctaccttgttgatactttgtgttcctagtgtatatagtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
826 |
ttaatcatgcagctaattagttaaagtttttattcatggctcttaatgaagatcaattaacttaccttgttgatactttgtgttcctagtgtatatagtg |
727 |
T |
|
| Q |
201 |
tgtgta--tatacgatttatgtgaagcaatt |
229 |
Q |
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|||||| ||||||||||||||||||||||| |
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| T |
726 |
tgtgtatatatacgatttatgtgaagcaatt |
696 |
T |
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