View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10332_high_1 (Length: 431)
Name: NF10332_high_1
Description: NF10332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10332_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 424
Target Start/End: Original strand, 28438796 - 28439197
Alignment:
| Q |
17 |
aatctaacgtggaaattgagaaagtaatgatttagctatgtagcaccaacatttcatattgatgtcatgtcagtatcagtactgtgtcagtgcctgactc |
116 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || |||||||||| ||||| |
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| T |
28438796 |
aatctaacatggaaattgagaaagtaatgatttagctatgtagcaccgatatttcatattgatgtcatgtcagta------ctatgtcagtgcccgactc |
28438889 |
T |
|
| Q |
117 |
gggcacatgtctcgttacattcaaatatttgtattctcattctttgcttattatatattagatattcttcaatggaagaaaaatgtggtgacttgaaaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28438890 |
gggcacatgtctcgttacattcaaatatttgtattctcatcctttgcttattatatattagatattcttcaatggaagaaaaatgtggtgacttgaaaaa |
28438989 |
T |
|
| Q |
217 |
tgttgcaaactgaattagaatcagttgattaaattcaggtattgatgatgatctaatgaactgggagttttgtcttgacatggcaatcttaagcctcaca |
316 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28438990 |
tgtaccaaactgaattagaatcagttgattaaattcaggtattgatgatgatctaatgaactgggagttttgtcttgacatggcaatcttaagcctcaca |
28439089 |
T |
|
| Q |
317 |
actgaaaaaggggtcggtgataagttacttattctctttttgggatctgtaatggaatttttggactgttgttaattgaaactgctagacttcaatgtca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28439090 |
actgaaaaaggggtcggtgataagttacttattctctttttgggatctgtaatggaatttttggactgttgttaattgaaactgctagacttcaatgtca |
28439189 |
T |
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| Q |
417 |
cacctttg |
424 |
Q |
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| T |
28439190 |
cacctttg |
28439197 |
T |
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