View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10332_low_2 (Length: 368)
Name: NF10332_low_2
Description: NF10332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10332_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 4e-88; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 2159307 - 2159479
Alignment:
| Q |
1 |
attatgaatgcttattgtacaccatgcatttcatagtgtaaaataggaatatgacccaaataactgctatggtttcttaattccttttgaatactatatc |
100 |
Q |
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| T |
2159307 |
attatgaatgcttattgtacaccatgcatttcatagtgtaaaataggaatatgacccaaataattgctatggtttcttaattccttttgaatactatatc |
2159406 |
T |
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| Q |
101 |
ttcactagagatcacttaccaattagcaatgataaagtgatgcaataatcatgctccaaacgatcaaaatgat |
173 |
Q |
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| T |
2159407 |
ttcactagagatgacttaccaattagcaatgataaagtgatgcaataatcatgctccaaacgatcaaaatgat |
2159479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 166 - 284
Target Start/End: Original strand, 2159515 - 2159633
Alignment:
| Q |
166 |
aaaatgatattgcacttgttttcagaagtatgaataagattccaaagatgctgctgtttttagattttagggtggtttatcgtaactcaaagtaggcata |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2159515 |
aaaatgatattgcacttgttttcagaagtatgaataagattccaaagatgctgctgtttttagattttagggtggtttatcgtaactcaaagtaggcata |
2159614 |
T |
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| Q |
266 |
cttgagtaattaaaacaag |
284 |
Q |
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| T |
2159615 |
cttgagtaattaaaacaag |
2159633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 2162058 - 2162114
Alignment:
| Q |
167 |
aaatgatattgcacttgttttcagaagtatgaataagattccaaagatgctgctgtt |
223 |
Q |
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||||||||||||||||| | ||||||||||||||||| ||||||||||||||||| |
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| T |
2162058 |
aaatgatattgcacttgatagaagaagtatgaataagatcccaaagatgctgctgtt |
2162114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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