View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10332_low_4 (Length: 245)

Name: NF10332_low_4
Description: NF10332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10332_low_4
NF10332_low_4
[»] chr7 (5 HSPs)
chr7 (7-245)||(25636372-25636610)
chr7 (140-241)||(25478956-25479057)
chr7 (157-241)||(25442330-25442414)
chr7 (145-241)||(25484269-25484365)
chr7 (149-241)||(25436474-25436566)
[»] chr5 (1 HSPs)
chr5 (145-241)||(500339-500435)
[»] chr2 (6 HSPs)
chr2 (143-241)||(35177956-35178054)
chr2 (146-233)||(35169673-35169760)
chr2 (145-241)||(35055092-35055188)
chr2 (145-241)||(35106005-35106101)
chr2 (145-224)||(35183971-35184050)
chr2 (155-239)||(35047044-35047128)


Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 7 - 245
Target Start/End: Original strand, 25636372 - 25636610
Alignment:
Q  7 agagacggatccttaacctttgtaaagggccccattggactcatctatcactttttaattcaaatcaaacctgtagggcaagagaggtataatacaactt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25636372 agagacggatccttaacctttgtaaagggccccattggactcatctatcactttttaattcaaatcaaacctgtagggcaagtgaggtataatacaactt 25636471  T
Q  107 caatttcttcgatggattctgatagcagcgaaggctatagctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25636472 caatttcttcgatggattctgatagcagcgaaggctatagctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttga 25636571  T
Q  207 ccatctctatgctcatctcactagaaaaggtatttcgac 245  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25636572 ccatctctatgctcatctcactagaaaaggtatttcgac 25636610  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 25479057 - 25478956
Alignment:
Q  140 gctatagctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtat 239  Q
    ||||||| |||| ||| || || ||||||||||||||||||  ||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||    
T  25479057 gctatagatatagatacgacgtgtttatcagtttcagaggtattgacacccgtaaaacctttgctgaccatctctatgctcatctcactagaaaaggtat 25478958  T
Q  240 tt 241  Q
    ||    
T  25478957 tt 25478956  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 157 - 241
Target Start/End: Original strand, 25442330 - 25442414
Alignment:
Q  157 gatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtattt 241  Q
    ||||| || |||||||| ||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||||||||||    
T  25442330 gatgtgttcatcagttttagaggtcctgacacccgcaattcctttgttgaccatctctacgatcatctcactagaaaaggtattt 25442414  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 145 - 241
Target Start/End: Original strand, 25484269 - 25484365
Alignment:
Q  145 agctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtattt 241  Q
    ||||||| ||| ||||| || ||||||||||||||| |||||||||| ||  ||||||||||||||||||| |||||||||| ||||||||||||||    
T  25484269 agctatagatacgatgtgttcatcagtttcagaggttctgacacccgtaattcctttgttgaccatctctacgctcatctcaatagaaaaggtattt 25484365  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 25436566 - 25436474
Alignment:
Q  149 ataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtattt 241  Q
    ||||||| ||||| || |||||||| |||||| |||| ||||||||  | |||||||| |||||| |  |||||||   ||||||||||||||    
T  25436566 ataaatacgatgtgttcatcagttttagaggttctgagacccgcaattcttttgttgatcatctccactctcatctagttagaaaaggtattt 25436474  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 145 - 241
Target Start/End: Complemental strand, 500435 - 500339
Alignment:
Q  145 agctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtattt 241  Q
    ||||||| ||||||||| |||||||||||||||||| | ||||| |||||||| |||||||| ||||||||||||||||||| ||||||||||||||    
T  500435 agctatagatatgatgtgtttatcagtttcagaggttccgacacacgcaacacttttgttgatcatctctatgctcatctcattagaaaaggtattt 500339  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 35178054 - 35177956
Alignment:
Q  143 atagctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtattt 241  Q
    ||||||||||||| || || |||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||| || |||||||||||||    
T  35178054 atagctataaatacgacgtgtttatcagtttcagaggtccagacacccgcaacacttttgttgatcatctttatgctcatctaacaagaaaaggtattt 35177956  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 35169760 - 35169673
Alignment:
Q  146 gctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaa 233  Q
    |||||||||| ||||| |||||||||||||||||  |||||||||| ||||| |||||||| ||||| ||||||||||| ||||||||    
T  35169760 gctataaatacgatgtgtttatcagtttcagaggcgctgacacccgtaacacttttgttgatcatctttatgctcatctaactagaaa 35169673  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 241
Target Start/End: Complemental strand, 35055188 - 35055092
Alignment:
Q  145 agctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtattt 241  Q
    ||||||||||| |  || || |||||||| |||||||||||||| ||||| |  |||||||| ||||| ||||||||||| || |||||||||||||    
T  35055188 agctataaatacggggtgttcatcagttttagaggtcctgacactcgcaatagttttgttgatcatctttatgctcatctaacaagaaaaggtattt 35055092  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 241
Target Start/End: Complemental strand, 35106101 - 35106005
Alignment:
Q  145 agctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtattt 241  Q
    ||||||| ||| || || |||||||||||||||||||| ||||| |||||||| ||||| || ||||| ||||||||||| |  ||||| |||||||    
T  35106101 agctatagatacgacgtgtttatcagtttcagaggtccagacacgcgcaacacttttgtcgatcatctttatgctcatctaaaaagaaagggtattt 35106005  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 35184050 - 35183971
Alignment:
Q  145 agctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatct 224  Q
    ||||||| ||||||||| |||||||||||| | ||| |||||||||||| ||| |||||||| |||||  ||||||||||    
T  35184050 agctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcagcacttttgttgatcatcttcatgctcatct 35183971  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 239
Target Start/End: Complemental strand, 35047128 - 35047044
Alignment:
Q  155 atgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtat 239  Q
    ||||||| |||||||||||||||||  | ||||| |||||||| ||  | || |||||||||  ||||||||  |||||||||||    
T  35047128 atgatgtgtttatcagtttcagaggcaccgacactcgcaacactttcatcgatcatctctatcatcatctcatcagaaaaggtat 35047044  T

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