View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10332_low_5 (Length: 237)
Name: NF10332_low_5
Description: NF10332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10332_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 25636717 - 25636937
Alignment:
| Q |
2 |
gcttcatcaacatggtgtttggatgaaatggctgctattgatgaatccggtagtagattgaaacaagttgtttttcctgtcttctatgacattgatccat |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25636717 |
gcttcatcaacatggtgtttggatgaaatggctgctattgatgaatccagtagaagattgaaactagttgtttttcctgtcttctatgacattgatccat |
25636816 |
T |
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| Q |
102 |
ctcatgtaagaaaaataagtggagcgtatgaggatgcctttgttttacacaacgagctgttcaaacacgatccagacagagttgctcgatggacgaggac |
201 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| | |
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| T |
25636817 |
ctcatgtaagaaaaagatctggagcgtatgaggatgcctttgttttacacaacgagctgttcaaacacgatccagacagagttgctcaatggaggagggc |
25636916 |
T |
|
| Q |
202 |
catgacttctttggctggatc |
222 |
Q |
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||||||||||||||||||||| |
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| T |
25636917 |
catgacttctttggctggatc |
25636937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 2 - 152
Target Start/End: Original strand, 25442525 - 25442675
Alignment:
| Q |
2 |
gcttcatcaacatggtgtttggatgaaatggctgctattgatgaatccggtagtagattgaaacaagttgtttttcctgtcttctatgacattgatccat |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25442525 |
gcttcatcaacatggtgtttggatgaaatggctgctattgatgaatccagtagaagattgaaacaagttgtttttcctgtcttctatgacattgatccat |
25442624 |
T |
|
| Q |
102 |
ctcatgtaagaaaaataagtggagcgtatgaggatgcctttgttttacaca |
152 |
Q |
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| T |
25442625 |
ctcatgtaagaaaaagatctggagcgtatgaggatgcctttgttttacaca |
25442675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 2 - 152
Target Start/End: Complemental strand, 25436363 - 25436213
Alignment:
| Q |
2 |
gcttcatcaacatggtgtttggatgaaatggctgctattgatgaatccggtagtagattgaaacaagttgtttttcctgtcttctatgacattgatccat |
101 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||||||| || ||||| || ||||| | ||||||| |
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| T |
25436363 |
gcttcatcaacatggtgtttggatgaaatggctgctattgatgaatctagaaaaaaattgaaacaagttgtattccctgttttttatgatgtcgatccat |
25436264 |
T |
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| Q |
102 |
ctcatgtaagaaaaataagtggagcgtatgaggatgcctttgttttacaca |
152 |
Q |
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||||||| ||||| || ||||| ||||||| |||| ||||||||||||| |
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| T |
25436263 |
ctcatgttcgaaaacaaaatggagtgtatgagaatgcatttgttttacaca |
25436213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 150
Target Start/End: Original strand, 25484476 - 25484624
Alignment:
| Q |
2 |
gcttcatcaacatggtgtttggatgaaatggctgctattgatgaatccggtagtagattgaaacaagttgtttttcctgtcttctatgacattgatccat |
101 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||| | | | ||||||||||||||||| ||||| || ||||| ||||||||| |
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| T |
25484476 |
gcttcttcaacatggtgtttggatgaaatggctgctattagcgaatctagaataaatttgaaacaagttgttttccctgttttttatgatgttgatccat |
25484575 |
T |
|
| Q |
102 |
ctcatgtaagaaaaataagtggagcgtatgaggatgcctttgttttaca |
150 |
Q |
| |
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||||||| | |||| || ||||| |||||| |||| ||||||||||| |
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|
| T |
25484576 |
ctcatgtcaaaaaacaaaatggagtatatgagaatgcatttgttttaca |
25484624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 25478785 - 25478695
Alignment:
| Q |
62 |
aaacaagttgtttttcctgtcttctatgacattgatccatctcatgtaagaaaaataagtggagcgtatgaggatgcctttgttttacaca |
152 |
Q |
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|||||| ||||||| ||||| |||||| | | |||||||||||||| ||||| || |||| ||||||| |||||||||||||||||| |
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| T |
25478785 |
aaacaaattgttttacctgttttctattatgtcgatccatctcatgtccgaaaacaaaatggaaagtatgagaatgcctttgttttacaca |
25478695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 35105888 - 35105788
Alignment:
| Q |
8 |
tcaacatggtgtttggatgaaatggctgctattgatgaatccggtagtagattgaaacaagttgtttttcctgtcttctatgacattgatccatctcatg |
107 |
Q |
| |
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||||||||||||||||| || |||||| || ||| ||||| | ||| |||||||||||| |||||| ||||| || ||||| ||||||||||||||| |
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| T |
35105888 |
tcaacatggtgtttggaagagatggctactgttgctgaatgccgtaaaagattgaaacaaactgttttccctgttttttatgatgttgatccatctcatg |
35105789 |
T |
|
| Q |
108 |
t |
108 |
Q |
| |
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| |
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|
| T |
35105788 |
t |
35105788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 500228 - 500196
Alignment:
| Q |
2 |
gcttcatcaacatggtgtttggatgaaatggct |
34 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
500228 |
gcttcatcaacatggtgtttggatgaaatggct |
500196 |
T |
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