View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10333_low_2 (Length: 361)
Name: NF10333_low_2
Description: NF10333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10333_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 20 - 350
Target Start/End: Original strand, 12560181 - 12560511
Alignment:
| Q |
20 |
agttattatgtctaattaattatttgattgatcgattagatggtccaaaattgctcaatacttaccgggaagaacagacaacgagatcaagaattattgg |
119 |
Q |
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| T |
12560181 |
agttattatgtctaattaattatttgattgatcgattagatggtctaaaattgctcaatacttaccgggaagaacagacaacgagatcaagaattattgg |
12560280 |
T |
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| Q |
120 |
agaacccgtgtccaaaaacatgccaaacaactcaaatgtgacgtaaacagcaagcaatttaaagatgctatgcgatacctttggatgccaaggctagtgg |
219 |
Q |
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| T |
12560281 |
agaacccgtgtccaaaaacatgccaaacaactcaaatgtgacgtaaacagcaagcaatttaaagatgctatgcgatacctttggatgccaaggctagtgg |
12560380 |
T |
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| Q |
220 |
agcgcatccaagctgccgcatccacctccgccaccctagccaccgccactaataatggtttaccaagtggtacaacgacggtcaccaccaacaatacacc |
319 |
Q |
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| T |
12560381 |
agcgcatccaagctgccgcatccacctccgccaccctagccaccgccactaataatggtttaccaagtggtacaacgacggtcaccaccaacaatacacc |
12560480 |
T |
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| Q |
320 |
atacaacataaacaacaattttgatgtccat |
350 |
Q |
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| T |
12560481 |
atacaacataaacaacaattttgatgtccat |
12560511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 57 - 238
Target Start/End: Complemental strand, 50777567 - 50777386
Alignment:
| Q |
57 |
agatggtccaaaattgctcaatacttaccgggaagaacagacaacgagatcaagaattattggagaacccgtgtccaaaaacatgccaaacaactcaaat |
156 |
Q |
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| T |
50777567 |
agatggtcgaaaatagcccaatatttaccaggaagaacggacaatgaaataaaaaattattggagaactcgtgttcaaaagcttgccaaacaactcaaat |
50777468 |
T |
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| Q |
157 |
gtgacgtaaacagcaagcaatttaaagatgctatgcgatacctttggatgccaaggctagtggagcgcatccaagctgccgc |
238 |
Q |
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| T |
50777467 |
gcgacgtgaatagcaagcaattcaaggacaccatgcgctacctttggatgccaaggctagtcgaacgtattcaagccgccgc |
50777386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 49848623 - 49848559
Alignment:
| Q |
60 |
tggtccaaaattgctcaatacttaccgggaagaacagacaacgagatcaagaattattggagaac |
124 |
Q |
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| T |
49848623 |
tggtcaaaaattgctcagcatttaccaggaagaacagataatgagataaagaactattggagaac |
49848559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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