View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10333_low_3 (Length: 356)
Name: NF10333_low_3
Description: NF10333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10333_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 341
Target Start/End: Complemental strand, 40890951 - 40890600
Alignment:
| Q |
11 |
cataggtgtatcccatgcatcgtcgacgtatacaactctggaaactaatccaaaaaattaatctctatcatatatttttt-cataagcatcaattagggc |
109 |
Q |
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| T |
40890951 |
cataggtgtatcccatgtatcgtcgacgtatacaactctggaaactaatccaaaaaattaatctctatcagatatttttttcataagcatcaattagggc |
40890852 |
T |
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| Q |
110 |
tccgtgcactaaatat------------------gcattatgtttttattatctgcgttgttaggtaactttcatatatctgtatagctaactaaatata |
191 |
Q |
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| T |
40890851 |
ttcatgcactaaatattcattatgtttttaatatgcattatgtttttattatctgcgttgttaggtaactttcatatatctgtatagctaactaaatata |
40890752 |
T |
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| Q |
192 |
atcaattatgattttaataaattttaggtactatctgatcttgtttttaatataataaaaataactgttctcatctttatgttccttagctacatgcaga |
291 |
Q |
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| T |
40890751 |
atcaattatgattttaataaattttaggtactatctgatcttgtttttaatataataaaaataactgttctcatctttatgttccttagctacatgcaga |
40890652 |
T |
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| Q |
292 |
ttgtgttttcaattgtaattaattggatcaagaacttca--gtctgcatttt |
341 |
Q |
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| T |
40890651 |
ttgtgttttcaattgtaattaattggatcaagaacttcactgtctgcatttt |
40890600 |
T |
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