View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10333_low_4 (Length: 354)
Name: NF10333_low_4
Description: NF10333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10333_low_4 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 36327866 - 36327530
Alignment:
| Q |
18 |
aaattttacagtggcagtcacctactttgcatggggcttgtaaattgctccaagattacagatgaaggatttactgaagccatgagaaagcttccacaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36327866 |
aaattttacagtggcagtcacctactttgcatggggcttgtaaattgctcgaagattacagatgaaggatttactgaagccatgagaaagcttccacaat |
36327767 |
T |
|
| Q |
118 |
tggagaagattgacatttcacattgccacctaaccgatgtttctcttaaagccctaggtcgttattgccctcttttgaaatcccttaaatattgttcatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36327766 |
tggagaagattgacatttcacattgccacctaaccgatgtttctcttaaagccctaggtcgttattgccctcttttgaaatcccttaaatattgttcatg |
36327667 |
T |
|
| Q |
218 |
gtcgcatgaatcttgtgactctgataaaatggcgtttgttattgctgaaacgatgcctggtctacgccatcttgatttgaaaggacacgagctcactgaa |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36327666 |
gtcgcatgaatcttgtgactctgataaaatggcgtttgttattgctgaaacgatgcctggtctacgccatcttgatttgaaaggacacgagctcactgaa |
36327567 |
T |
|
| Q |
318 |
cttggtgtgcttgccattattgatagctgccctcttc |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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| T |
36327566 |
cttggtgtgcttgccattattgatagctgccctcttc |
36327530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 16 - 354
Target Start/End: Complemental strand, 36313626 - 36313288
Alignment:
| Q |
16 |
tcaaattttacagtggcagtcacctactttgcatggggcttgtaaattgctccaagattacagatgaaggatttactgaagccatgagaaagcttccaca |
115 |
Q |
| |
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||||||||||||||||||| |||||| | |||||||||||||| ||||||| | |||||||||||||||||||| |||||| ||||||||||||| | |
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| T |
36313626 |
tcaaattttacagtggcagacacctatgtcgcatggggcttgtagattgctcgaggattacagatgaaggatttagtgaagctgtgagaaagcttccgcg |
36313527 |
T |
|
| Q |
116 |
attggagaagattgacatttcacattgccacctaaccgatgtttctcttaaagccctaggtcgttattgccctcttttgaaatcccttaaatattgttca |
215 |
Q |
| |
|
||||||||| ||| ||||||||| | ||||||| ||||| |||||| ||||||| ||||| | ||||||||||||||||| ||||||| |||| | |
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| T |
36313526 |
gttggagaaggttgtaatttcacatcactacctaactgatgtctctcttgaagcccttggtcgatcatgccctcttttgaaatcgcttaaat-ttgtaaa |
36313428 |
T |
|
| Q |
216 |
tggtcgcatga-atcttgtgactctgataaaatggcgtttgttattgctgaaacgatgcctggtctacgccatcttgatttgaaaggacacgagctcact |
314 |
Q |
| |
|
| | | | |||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
36313427 |
ttcaaggtttacatcttgtgactctgataaaacggcacttgttattgctgaaacaatgcctggtctacgccatcttgatatgaaaggacacaagctcact |
36313328 |
T |
|
| Q |
315 |
gaacttggtgtgcttgccattattgatagctgccctcttc |
354 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||| |
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|
| T |
36313327 |
gaacttggtgtgctcgccattattgataaatgccctcttc |
36313288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 36326002 - 36325666
Alignment:
| Q |
18 |
aaattttacagtggcagtcacctactttgcatggggcttgtaaattgctccaagattacagatgaaggatttactgaagccatgagaaagcttccacaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||| || ||||||||| ||||||| ||||||||||||| | | |
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| T |
36326002 |
aaattttacagtggcagtcacctactttgcatgcggcttgtaaattgttgggggatgacaaataaaggatttagtgaagccttgagaaagcttccgctgt |
36325903 |
T |
|
| Q |
118 |
tggagaagattgacatttcacattgccacctaaccgatgtttctcttaaagccctaggtcgttattgccctcttttgaaatcccttaaatattgttcatg |
217 |
Q |
| |
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| |||||| ||||||||||||||| | ||||| || || |||||| ||||||| ||||| | |||||||||||||||||| ||||||| || | | |
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| T |
36325902 |
tagagaaggttgacatttcacattcttatctaactgaggtctctcttgaagcccttggtcgatcttgccctcttttgaaatcgcttaaattttcagtagg |
36325803 |
T |
|
| Q |
218 |
gtcgcatgaatcttgtgactctgataaaatggcgtttgttattgctgaaacgatgcctggtctacgccatcttgatttgaaaggacacgagctcactgaa |
317 |
Q |
| |
|
| | || ||| |||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||| |
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|
| T |
36325802 |
atggtttgcttctcgtgaatctgataaaatggcttttgttattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaagctcagtgaa |
36325703 |
T |
|
| Q |
318 |
cttggtgtgcttgccattattgatagctgccctcttc |
354 |
Q |
| |
|
||| ||||||| ||||| ||||||| |||||||||| |
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| T |
36325702 |
cttcgtgtgctcgccataattgataaatgccctcttc |
36325666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 36333697 - 36333367
Alignment:
| Q |
16 |
tcaaattttacagtggcagtcacctactttgcatggggcttgtaaattgctccaagattacagatgaaggatttactgaagccatgagaaagcttccaca |
115 |
Q |
| |
|
||||||||| |||||||||||| |||| ||||||| ||||||||||||| | |||||||||| |||||||| | |||||||||||||||||||||| |
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|
| T |
36333697 |
tcaaattttgcagtggcagtcagctacgttgcatgcggcttgtaaattgttgtttgattacagataaaggatttggtaaagccatgagaaagcttccaca |
36333598 |
T |
|
| Q |
116 |
attggagaagattgacatttcacattgccacctaaccgatgtttctcttaaagccctaggtcgttattgccctcttttgaaatcccttaaatattgttca |
215 |
Q |
| |
|
|||||||| | ||||||||| ||||| ||||||||||| ||||| ||| || ||||| | ||||| ||||||||||| ||||||||| | |
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| T |
36333597 |
gttggagaaagtggacatttcatattgctgtctaaccgatgt--ctcttgaagttcttggtcgatcttgccatcttttgaaattgcttaaatatcatgtg |
36333500 |
T |
|
| Q |
216 |
tggtcgcatg------aatcttgtgactctgataaaatggcgtttgttattgctgaaacgatgcctggtctacgccatcttgatttgaaaggacacgagc |
309 |
Q |
| |
|
|||| | | ||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| ||| |
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|
| T |
36333499 |
tggtggtactctacgcaatcttgcgactctgataaaatggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaagc |
36333400 |
T |
|
| Q |
310 |
tcactgaacttggtgtgcttgccattattgata |
342 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||| |
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|
| T |
36333399 |
tcactcaacttggtgtgctcgccattattgata |
36333367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 160 - 354
Target Start/End: Complemental strand, 36336253 - 36336059
Alignment:
| Q |
160 |
ctcttaaagccctaggtcgttattgccctcttttgaaatcccttaaatattgttcatggtcgcatgaatcttgtgactctgataaaatggcgtttgttat |
259 |
Q |
| |
|
||||| ||||||| ||||| | ||||||||||||||||| ||| | ||| |||||| |||| ||| ||||||||||||||||||||||||||| |||| |
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|
| T |
36336253 |
ctcttgaagcccttggtcgatcttgccctcttttgaaatggcttcagtataattcatgctcgcttgactcttgtgactctgataaaatggcgtttcttat |
36336154 |
T |
|
| Q |
260 |
tgctgaaacgatgcctggtctacgccatcttgatttgaaaggacacgagctcactgaacttggtgtgcttgccattattgatagctgccctcttc |
354 |
Q |
| |
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||||||||| |||||||||||| ||||||||||| ||| ||||||| |||||||||||||||| ||||| ||||||||||||| |||||||||| |
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|
| T |
36336153 |
tgctgaaacaatgcctggtctatgccatcttgatatgagaggacacaagctcactgaacttggcgtgctcgccattattgataaatgccctcttc |
36336059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 36321025 - 36320698
Alignment:
| Q |
18 |
aaattttacagtggcagtcacctactttgcatggggcttgtaaattgctccaagattacagatgaaggatttactgaagccatgagaaagcttccacaat |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||| ||| | ||||||| || ||||||||| |||||| | ||||||||||| | | |
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|
| T |
36321025 |
aaattttacagtggcagtcacctacgttgcatgtggcttgtaagttgtttggggattacaaataaaggatttagtgaagctgtcagaaagcttccgcggt |
36320926 |
T |
|
| Q |
118 |
tggagaagattgacatttcacattgccacctaaccgatgtttctcttaaagccctaggtcgttattgccctcttttgaaatcccttaaatattgttcatg |
217 |
Q |
| |
|
| | | || || ||||| | |||| || | || || |||||| ||||||| ||||| | |||||||||| |||||| ||||||||| | |||| |
|
|
| T |
36320925 |
taggggaggttaacattatattttgcattatatctgaggtctctcttgaagcccttggtcgatcttgccctcttctgaaattgcttaaatatcatgcatg |
36320826 |
T |
|
| Q |
218 |
gt----cgcatgaatcttgtgactctgataaaatggcgtttgttattgctgaaacgatgcctggtctacgccatcttgatttgaaaggacacgagctcac |
313 |
Q |
| |
|
|| | || | |||||| || | || ||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| | |||| |
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|
| T |
36320825 |
gtaccccacacg-atcttgcaacccagagaaaatggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaatctcag |
36320727 |
T |
|
| Q |
314 |
tgaacttggtgtgcttgccattattgata |
342 |
Q |
| |
|
|||||||||||||| |||||||||||||| |
|
|
| T |
36320726 |
tgaacttggtgtgcgtgccattattgata |
36320698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 16053332 - 16053213
Alignment:
| Q |
18 |
aaattttacagtggcagtcacctactttgcatggggcttgtaaattgctccaagattacagatgaaggatttactgaagccatgagaaagcttccacaat |
117 |
Q |
| |
|
||||||||||||||||||||||||| || |||| || ||||| |||||| | ||| |||| |||||||||| |||||| |||| |||||||| | | |
|
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| T |
16053332 |
aaattttacagtggcagtcacctacgttccatgcggtttgtagattgctatgaaatttcagaagaaggatttagtgaagctgtgaggaagcttccgctgt |
16053233 |
T |
|
| Q |
118 |
tggagaagattgacatttca |
137 |
Q |
| |
|
| |||||| ||| ||||||| |
|
|
| T |
16053232 |
tagagaagcttgtcatttca |
16053213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 316
Target Start/End: Complemental strand, 42563630 - 42563560
Alignment:
| Q |
246 |
atggcgtttgttattgctgaaacgatgcctggtctacgccatcttgatttgaaaggacacgagctcactga |
316 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||||||| ||||||||||| | || |||||| |||| ||||| |
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|
| T |
42563630 |
atggcgtttgttatcgctgaaatgatgtctggtctgtgccatcttgatatcaatggacacaagcttactga |
42563560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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