View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10334_high_1 (Length: 379)
Name: NF10334_high_1
Description: NF10334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10334_high_1 |
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| [»] scaffold0398 (1 HSPs) |
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Alignment Details
Target: scaffold0398 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: scaffold0398
Description:
Target: scaffold0398; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 15420 - 15087
Alignment:
| Q |
1 |
caagatgaagataccatatgcctccaaagataacgaccactagccatatccaaaaaagtccaaaacccagattctaacgcagcacgaacctaaaatcaca |
100 |
Q |
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| T |
15420 |
caagatgaagataccatatgcctccaaagataacgaccactagccatatccaaaaaagtccaaaacccagattctaacgcagcacgaacctaaaatcaca |
15321 |
T |
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| Q |
101 |
aattcagggttgattnnnnnnnnncatatttttattaaaattgaagcaaaagggtgaaatgggtcaaccttagaattttgatttgacgaaggattagaag |
200 |
Q |
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| T |
15320 |
aattcagggttaattaaaaaaaa-catatttttattaaaattgaagcaaaagggtgaaatgggtcaaccttagaattttgatttgacgaaggattagaag |
15222 |
T |
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| Q |
201 |
aatttgagattttagcgttagaaacagcatcttcatcat---catcgatcttaggctgagattggaaatttctgaggacaaagaatcctgcgagtgttgc |
297 |
Q |
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| T |
15221 |
aatctgagattttagcgttagaaacagcatcttcatcatcatcatcgatcttacgctgagatcggaaatttctgaggacaaagaattctgcgagtgttgc |
15122 |
T |
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| Q |
298 |
tgacaagaatatgagaattagcctcaaagggcaca |
332 |
Q |
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| T |
15121 |
tgacaagaatatgagaattagcctcaaagggcaca |
15087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 43041063 - 43041260
Alignment:
| Q |
1 |
caagatgaagataccatatgcctccaaagataacgaccactagccatatccaaaaaagtccaaaacccagattctaacgcagcacgaacctaaaatcaca |
100 |
Q |
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| T |
43041063 |
caagatgaagataccatatgcctccaaagataacgaccactagccatatccaaaaaagtccaaaacccagattctaacgcagcacgaacctaaaatcaca |
43041162 |
T |
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| Q |
101 |
aattcagggttgattnnnnnnnnncatatttttattaaaattgaagcaaaagggtgaaatgggtcaaccttagaattttgatttgacgaaggattagaa |
199 |
Q |
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| T |
43041163 |
aattcagggttaatt-aaaaaaaacatatttttattaaaattgaagcaaaagggtgaaatgggtcaaccttagaattttgatttgacgaaggattagaa |
43041260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 233 - 332
Target Start/End: Original strand, 43041273 - 43041372
Alignment:
| Q |
233 |
tcatcatcatcgatcttaggctgagattggaaatttctgaggacaaagaatcctgcgagtgttgctgacaagaatatgagaattagcctcaaagggcaca |
332 |
Q |
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| T |
43041273 |
tcatcatcatcgatcttaggctgagatcgaaaatttctgaggacaaagaatactgcgagtgttgctgacaagaatatgagaattagcctcaaagggcaca |
43041372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 2 - 332
Target Start/End: Original strand, 27288031 - 27288378
Alignment:
| Q |
2 |
aagatgaagataccatatgcctccaaagataacgaccactagccatatccaaaaaagtccaaaacccagattctaacgcagcacgaaccta--------- |
92 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | ||||||||||||| |
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| T |
27288031 |
aagatgatgataccatatgcctccaaagataacgtccactagccatatccacaaaagtccaaaacccagattctatcacagcacgaacctaaaaatcaac |
27288130 |
T |
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| Q |
93 |
aaatcacaaattcagggttgatt--nnnnnnnnncatatttttattaaaattgaagcaaaagggtgaaatgggtcaaccttagaattttgatttgacgaa |
190 |
Q |
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|||||||||||| ||||| ||| || |||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||| ||| |
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| T |
27288131 |
aaatcacaaatttagggtaaattaaaaaaaaaaacacatttttattaaaattgaagcaaaagggtcagatgggtcaaccttagaattttcatttgatgaa |
27288230 |
T |
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| Q |
191 |
ggattagaagaatttgagattttagcgt---tagaaacagcatcttca---tcatcatcgatcttaggctgagattggaaatttctgaggacaaagaatc |
284 |
Q |
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| T |
27288231 |
gcatttgaagaatctgaaattttagggtttgtaggagcaagatcttcatcttcatcatcgatcttaggttgatttctgaaatttcggagaacgaagattc |
27288330 |
T |
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| Q |
285 |
ctgcgagtgttgctgacaagaatatgagaattagcctcaaagggcaca |
332 |
Q |
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| T |
27288331 |
cggcgagtgttgcggacaagaatatgagaattagcctcaaagggcaca |
27288378 |
T |
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