View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10334_high_4 (Length: 226)
Name: NF10334_high_4
Description: NF10334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10334_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 35341154 - 35341350
Alignment:
| Q |
1 |
ttaatattgacaaaatagaatgtttgagtggatgcttaatggttgtagaacatataaagtgttgaatgtagaaagtggaacgacatgttgtcatttgatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35341154 |
ttaatattgacaaaatagaatgtttgagtggatgcttaatggttgtagaacatataaagtgttgaatgtagaaagtggaacgacatgttgtcatttgatg |
35341253 |
T |
|
| Q |
101 |
atattctttggaagccataatgacgcggctacgagagtaataattttgcttggatcatattcaattttggggatattataaattcttataacactatac |
199 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35341254 |
atattctttgcaagcc--aatgacgcggctacgagagtaataattttgcttggatcatattgaattttggggatattataaattcttataacactatac |
35341350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 35356125 - 35356201
Alignment:
| Q |
3 |
aatattgacaaaatagaatgtttgagtggatgcttaatggttgtagaacatataaagtgttgaatgtagaaagtgga |
79 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35356125 |
aatattgacaaaatagaatgtttgagtggatgcttaatggatgtagaacatataaagtgttggatgtagaaagtgga |
35356201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 35374751 - 35374827
Alignment:
| Q |
3 |
aatattgacaaaatagaatgtttgagtggatgcttaatggttgtagaacatataaagtgttgaatgtagaaagtggaac |
81 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||| ||||||| |||||||| |
|
|
| T |
35374751 |
aatattgacaaaatagaatgtttgagtggatgcacaatggttg--ggacatataaagtgttggatgtagatagtggaac |
35374827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 35335980 - 35336068
Alignment:
| Q |
3 |
aatattgacaaaatagaatgtttgagtggatgctta--atggttgtagaacatataaagtgttgaatgtagaaagtggaacgacatgttg |
90 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || ||||||| |||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
35335980 |
aatattgacaaaataaaatgtttgagtggatgcatataatggttgg-gaacatataaagtgtttgatgtagaaagtggaacgacaagttg |
35336068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 85 - 178
Target Start/End: Original strand, 35372076 - 35372167
Alignment:
| Q |
85 |
atgttgtcatttgatgatattctttggaagccataatgacgcggctacgagagtaataattttgcttggatcatattcaa-ttttggggatatta |
178 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||||||||||||||||| || || |||| ||||||||| |
|
|
| T |
35372076 |
atgttgtcatttgatga-attctttggaagcca--atcacgcggcggcgagagtaataattttgcttggatcatgttgaactttttgggatatta |
35372167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 35346594 - 35346641
Alignment:
| Q |
131 |
acgagagtaataattttgcttggatcatattcaattttggggatatta |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
35346594 |
acgagagtaataattttgcttggatcatatttaattttggtgatatta |
35346641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 35343174 - 35343142
Alignment:
| Q |
3 |
aatattgacaaaatagaatgtttgagtggatgc |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
35343174 |
aatattgacaaaatagaatgtttgagtggatgc |
35343142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 35347846 - 35347814
Alignment:
| Q |
3 |
aatattgacaaaatagaatgtttgagtggatgc |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
35347846 |
aatattgacaaaatagaatgtttgagtggatgc |
35347814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 35351719 - 35351789
Alignment:
| Q |
85 |
atgttgtcatttgatgatattctttggaagccataatgacgcggctacgagagtaataattttgcttggatcatatt |
161 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || || ||||||||||||||||||||||||||||||| |
|
|
| T |
35351719 |
atgttgtcatttcatgatattctttggaagcca-----accatgc-acgagagtaataattttgcttggatcatatt |
35351789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 35368600 - 35368632
Alignment:
| Q |
3 |
aatattgacaaaatagaatgtttgagtggatgc |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
35368600 |
aatattgacaaaatagaatgtttgagtggatgc |
35368632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University