View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10334_low_3 (Length: 306)
Name: NF10334_low_3
Description: NF10334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10334_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 29 - 295
Target Start/End: Original strand, 28587081 - 28587347
Alignment:
| Q |
29 |
actaaaatgagatataagagttgtaagatcgtctgtaaataacggaaggtcggtattggccaaacttttgcttgctgtggtagagtctcttcttccaagt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28587081 |
actaaaatgagatataagagttgtaagatcgtctgtaaataacggaaggtcggtattggccaaacttttgcttgctgttgtagagtctcttcttccaagt |
28587180 |
T |
|
| Q |
129 |
tttactgtccatgacgggccacctaccgcgaatgatgcatcacgtgctgccacagcaagtatgtccgcgcaagacacaactccgggacaaactttctcaa |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28587181 |
tttactgtccatgacgggccacctaccgcgaatgatgcatcacgtgctgccacagcaagtatgtccgcgcaagacacaactccgggacaaactttctcaa |
28587280 |
T |
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| Q |
229 |
cctcagattttgctttatcaatgatttcaaatcctcttactgagttaatattaggaagtgcattctt |
295 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||| |
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| T |
28587281 |
cctcagattttgctttatcaatgatttcaaatcctcttactgagttaacatttggacgtgcactctt |
28587347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 159 - 295
Target Start/End: Original strand, 28592397 - 28592533
Alignment:
| Q |
159 |
aatgatgcatcacgtgctgccacagcaagtatgtccgcgcaagacacaactccgggacaaactttctcaacctcagattttgctttatcaatgatttcaa |
258 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28592397 |
aatgatgcatcacgtgctgccacagctagtatgtccgcgcaagacacaactccgggacaaattttctcaacctcagattttgctttatcaatgatttcaa |
28592496 |
T |
|
| Q |
259 |
atcctcttactgagttaatattaggaagtgcattctt |
295 |
Q |
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| T |
28592497 |
atcctcttactgagttaatattaggaagtgcattctt |
28592533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 28592181 - 28592301
Alignment:
| Q |
31 |
taaaatgagatataagagttgtaagatcgtctgtaaataacggaaggtcggtattggccaaacttttgcttgctgtggtagagtctcttcttccaagttt |
130 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
28592181 |
taaaatgagatataagagttgtaagatcgtccgtaaataacggaaggtcagtattggccaaacttttgcttgctgtggtagagtctctccgtccaagttt |
28592280 |
T |
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| Q |
131 |
tactgtccatgacgggccacc |
151 |
Q |
| |
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||| |||||||| || ||||| |
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| T |
28592281 |
taccgtccatgatggaccacc |
28592301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 159 - 295
Target Start/End: Complemental strand, 32493807 - 32493671
Alignment:
| Q |
159 |
aatgatgcatcacgtgctgccacagcaagtatgtccgcgcaagacacaactccgggacaaactttctcaacctcagattttgctttatcaatgatttcaa |
258 |
Q |
| |
|
|||||||||||||| ||||| || || | ||||| || |||||||||||||| || || |||||||| || | || ||||||||||||||| | ||||| |
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| T |
32493807 |
aatgatgcatcacgagctgctactgctacgatgtcagcacaagacacaactccagggcatactttctccacattagcttttgctttatcaataacttcaa |
32493708 |
T |
|
| Q |
259 |
atcctcttactgagttaatattaggaagtgcattctt |
295 |
Q |
| |
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|||||||||| ||||||||||| ||||||||| |||| |
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| T |
32493707 |
atcctcttacagagttaatatttggaagtgcactctt |
32493671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 151
Target Start/End: Complemental strand, 28595805 - 28595684
Alignment:
| Q |
31 |
taaaatgagatataagagttgtaagatcgtctgtaaataacggaaggtcggtattggccaaacttttg-cttgctgtggtagagtctcttcttccaagtt |
129 |
Q |
| |
|
||||||| ||||| |||||||| ||||| ||||||||| |||||||| | ||||||||||||||| || || |||||||||||||||||||||||| |
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| T |
28595805 |
taaaatgggatattagagttgttagatcatctgtaaattttggaaggtctgaattggccaaactttttactagcaatggtagagtctcttcttccaagtt |
28595706 |
T |
|
| Q |
130 |
ttactgtccatgacgggccacc |
151 |
Q |
| |
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|||| |||||||| || ||||| |
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| T |
28595705 |
ttaccgtccatgatggaccacc |
28595684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 295
Target Start/End: Complemental strand, 28595595 - 28595459
Alignment:
| Q |
159 |
aatgatgcatcacgtgctgccacagcaagtatgtccgcgcaagacacaactccgggacaaactttctcaacctcagattttgctttatcaatgatttcaa |
258 |
Q |
| |
|
||||||||||||||||| || | || | ||||| || |||||||||||||| ||||| |||||||| || |||| ||||||||||||||| | || | |
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| T |
28595595 |
aatgatgcatcacgtgccgctattgctacaatgtcagcacaagacacaactccaggacatactttctctacatcagcttttgctttatcaataacttgga |
28595496 |
T |
|
| Q |
259 |
atcctcttactgagttaatattaggaagtgcattctt |
295 |
Q |
| |
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| |||||||| || |||| ||| ||||||||| |||| |
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| T |
28595495 |
aacctcttacagaattaagatttggaagtgcactctt |
28595459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 151
Target Start/End: Complemental strand, 32494025 - 32493905
Alignment:
| Q |
31 |
taaaatgagatataagagttgtaagatcgtctgtaaataacggaaggtcggtattggccaaacttttgcttgctgtggtagagtctcttcttccaagttt |
130 |
Q |
| |
|
||||||| | |||||||||||| ||||| || |||||| |||||||| | ||||||| ||||||||| || ||| |||||||||||||| ||||| |
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| T |
32494025 |
taaaatgggctataagagttgttagatcatccgtaaattttggaaggtctgaattggcctgacttttgctagcaacggtggagtctcttcttccgagttt |
32493926 |
T |
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| Q |
131 |
tactgtccatgacgggccacc |
151 |
Q |
| |
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||| ||||||||||| ||||| |
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| T |
32493925 |
taccgtccatgacggaccacc |
32493905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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