View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10335_low_2 (Length: 255)
Name: NF10335_low_2
Description: NF10335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10335_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 1967981 - 1968208
Alignment:
| Q |
16 |
gttgcatagtaagagatcagattcatctaggaagaatattccagagttaaggacacaaaggtctcatttgaatcaagcagcaatagatttctccgattct |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1967981 |
gttgcatagtaagagatcagattcatctaggaagaatattccagagttaagggcacaaaggtctcatttgaatcaagcagcaatagatttctccgattct |
1968080 |
T |
|
| Q |
116 |
attaaaaaggaacagggcatgtcaggccgagacaccggaatggtaaacaacaactttctctttactgttatcaactttctatttatcaacttcctcttgn |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1968081 |
attaaaaaggaacagggcatgtcaggccgagacaccggaatggtaaacaacaactttctctttactgttatcaactttctatttatcaacttcctcttgt |
1968180 |
T |
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| Q |
216 |
nnnnnnatatggtcaaggtttatttttc |
243 |
Q |
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|||||||||||||||||||||| |
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| T |
1968181 |
ttttttatatggtcaaggtttatttttc |
1968208 |
T |
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