View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10336_high_21 (Length: 249)

Name: NF10336_high_21

Description: NF10336

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10336_high_21

[»] chr4 (2 HSPs)

Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 2)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 135; E-Value: 2e-70

Query Start/End: Original strand, 93 - 239

Target Start/End: Original strand, 17319779 - 17319925

Alignment:

Q	93	tttaagtagattgaatatatctccttgtatcttctatgagtggagttggaacccgaacgagtgcttaaaaagatgatttgggtgcggtgtttggctcacc	192	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	17319779	tttaagtagattgaatatatctccctgtatcttctatgagtggagttggaacccgaacgagtgcttaaaaagatgatttgggtgcggtgtttggctcacc	17319878	T

Q	193	cagtccatggaatttagcttttgctagagggactaacttatcctttg	239	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	17319879	cagtccatggaatttagcttttgctagggagactaacttatcctttg	17319925	T

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Target: chr4; HSP #2

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 74 - 148

Target Start/End: Complemental strand, 6437966 - 6437892

Alignment:

Q	74	tgttatcttggcatttgtgtttaagtagattgaatatatctccttgtatcttctatgagtggagttggaacccga	148	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	6437966	tgttgtcttggcattggagtttaagaaaattgaatatagcaacttgtttgttctatgagtggtgttggaacccga	6437892	T

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