View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10336_high_4 (Length: 467)

Name: NF10336_high_4
Description: NF10336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10336_high_4
NF10336_high_4
[»] scaffold2079 (1 HSPs)
scaffold2079 (154-458)||(96-396)
[»] chr7 (2 HSPs)
chr7 (155-407)||(6241962-6242208)
chr7 (425-458)||(6241912-6241945)
[»] chr2 (7 HSPs)
chr2 (337-404)||(15641840-15641907)
chr2 (251-290)||(10850715-10850754)
chr2 (251-290)||(10878229-10878268)
chr2 (340-390)||(15622006-15622057)
chr2 (340-390)||(15643846-15643897)
chr2 (340-390)||(15652896-15652947)
chr2 (337-407)||(43724873-43724943)
[»] chr3 (1 HSPs)
chr3 (251-289)||(16724110-16724148)
[»] chr1 (1 HSPs)
chr1 (337-401)||(10682669-10682732)


Alignment Details
Target: scaffold2079 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold2079
Description:

Target: scaffold2079; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 154 - 458
Target Start/End: Complemental strand, 396 - 96
Alignment:
Q  154 ccaacttgtgcatttgaggatagtcccataatttgcaatttatgttggtcacctatgggcggattcggggtacgcaatatgagaaaaattctacccgatt 253  Q
    |||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  396 ccaacttgtgcatttgagcatagtcgcataatttgcaattcatgttggtcacctatgggcggattcggggtacgcaatatgagaaaaattctacccgatt 297  T
Q  254 aagtatagtaggctatcttaatattgcaaaaaagtagtgtctgcgttccaaaatattcttttatattcacnnnnnnnnatcgatgttattttgcaagaga 353  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||         ||| ||||||||||||||||||    
T  296 aagtatagtaggctatcttaatattgcaaaaaagtagtgcctgcgttccaaaatattcttttatattca-ttttttttatccatgttattttgcaagaga 198  T
Q  354 ctatctctttctcctagcttcaaagaggttttcctacaaaattgatttgctacaccgaatggnnnnnnnnnctcttttatcttctactcaacttcttctt 453  Q
    |||| ||||||||| | |||||||||||||||||||||||||||||||||||||||| ||           ||||||||||||||||| |||||||||||    
T  197 ctatttctttctccaaacttcaaagaggttttcctacaaaattgatttgctacaccggat---ttttttttctcttttatcttctacttaacttcttctt 101  T
Q  454 catct 458  Q
    |||||    
T  100 catct 96  T

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Target: chr7 (Bit Score: 108; Significance: 5e-54; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 155 - 407
Target Start/End: Complemental strand, 6242208 - 6241962
Alignment:
Q  155 caacttgtgcatttgaggatagtcccataatttgcaatttatgttggtcacctatgggcggattcggggtacgcaatatgagaaaaattctacccgatta 254  Q
    |||||||| |||||||| |||||| |||||||||||||| |||||| |||| ||||| |||||||| ||||||||||||||||||       |||| |||    
T  6242208 caacttgttcatttgagcatagtcacataatttgcaattcatgttgatcacgtatggacggattcgcggtacgcaatatgagaaa-------cccggtta 6242116  T
Q  255 agtatagtaggctatcttaatattgcaaaaaagtagtgtctgcgttccaaaatattcttttatattcacnnnnnnnn-atcgatgttattttgcaagaga 353  Q
    |||||||||| ||| ||||||||||||||||||||||| |  |||| ||||||||||||||| ||||||         |||| | |||||||||||||||    
T  6242115 agtatagtagactaacttaatattgcaaaaaagtagtgcccacgtttcaaaatattcttttacattcactttttttttatcgttattattttgcaagaga 6242016  T
Q  354 ctatctctttctcctagcttcaaagaggttttcctacaaaattgatttgctaca 407  Q
    |||||||||||||| | |||||||||||||||| || |||||||||||||||||    
T  6242015 ctatctctttctccaaacttcaaagaggttttcttaaaaaattgatttgctaca 6241962  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 458
Target Start/End: Complemental strand, 6241945 - 6241912
Alignment:
Q  425 ctcttttatcttctactcaacttcttcttcatct 458  Q
    ||||||||||||||||| ||||||||||||||||    
T  6241945 ctcttttatcttctacttaacttcttcttcatct 6241912  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 404
Target Start/End: Complemental strand, 15641907 - 15641840
Alignment:
Q  337 tgttattttgcaagagactatctctttctcctagcttcaaagaggttttcctacaaaattgatttgct 404  Q
    |||||||||||||||| |  |||||| |||| ||||||||||| ||||||||||| |||| |||||||    
T  15641907 tgttattttgcaagaggcgttctcttcctccaagcttcaaagatgttttcctacagaatttatttgct 15641840  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 290
Target Start/End: Original strand, 10850715 - 10850754
Alignment:
Q  251 attaagtatagtaggctatcttaatattgcaaaaaagtag 290  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  10850715 attaagtatagtaagctatcttaatattgcaaaaaggtag 10850754  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 290
Target Start/End: Original strand, 10878229 - 10878268
Alignment:
Q  251 attaagtatagtaggctatcttaatattgcaaaaaagtag 290  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  10878229 attaagtatagtaagctatcttaatattgcaaaaaggtag 10878268  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 390
Target Start/End: Complemental strand, 15622057 - 15622006
Alignment:
Q  340 tattttgcaagagac-tatctctttctcctagcttcaaagaggttttcctac 390  Q
    ||||||||||||||| | |||||| |||| ||||||||||||||||||||||    
T  15622057 tattttgcaagagacgtttctcttcctccaagcttcaaagaggttttcctac 15622006  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 390
Target Start/End: Complemental strand, 15643897 - 15643846
Alignment:
Q  340 tattttgcaagagac-tatctctttctcctagcttcaaagaggttttcctac 390  Q
    ||||||||||||||| | |||||| |||| ||||||||||||||||||||||    
T  15643897 tattttgcaagagacgtttctcttcctccaagcttcaaagaggttttcctac 15643846  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 390
Target Start/End: Complemental strand, 15652947 - 15652896
Alignment:
Q  340 tattttgcaagagac-tatctctttctcctagcttcaaagaggttttcctac 390  Q
    ||||||||||||||| | |||||| |||| ||||||||||||||||||||||    
T  15652947 tattttgcaagagacgtttctcttcctccaagcttcaaagaggttttcctac 15652896  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 407
Target Start/End: Original strand, 43724873 - 43724943
Alignment:
Q  337 tgttattttgcaagagactatctctttctcctagcttcaaagaggttttcctacaaaattgatttgctaca 407  Q
    ||||||||||||||||||  ||||||||||| | ||| ||| |||||||||  ||||| | ||||||||||    
T  43724873 tgttattttgcaagagacgttctctttctccaaactttaaataggttttcccgcaaaaattatttgctaca 43724943  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 289
Target Start/End: Complemental strand, 16724148 - 16724110
Alignment:
Q  251 attaagtatagtaggctatcttaatattgcaaaaaagta 289  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  16724148 attaagtatagtaaactatcttaatattgcaaaaaagta 16724110  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 401
Target Start/End: Original strand, 10682669 - 10682732
Alignment:
Q  337 tgttattttgcaagagactatctctttctcctagcttcaaagaggttttcctacaaaattgattt 401  Q
    ||||||||||||||| |   ||||||||||| |||||||||||| |||| |||||||||| ||||    
T  10682669 tgttattttgcaagacatgttctctttctccaagcttcaaagagatttt-ctacaaaatttattt 10682732  T

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