View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10336_high_7 (Length: 447)
Name: NF10336_high_7
Description: NF10336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10336_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 29399431 - 29399000
Alignment:
| Q |
1 |
gaagattttggtattggtgcaattccagggatttcaacagcatcaccaatgcatgaaaaatgtttaccatcattgcttttctcagaaagaacagataaat |
100 |
Q |
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| T |
29399431 |
gaagattttggtattggtgcaattccagggatttcaacagcatcaccaatgcatgaaaaatgtttaccatcattgcttttctcagaaagaacagataaat |
29399332 |
T |
|
| Q |
101 |
atgcaaagaaagaaaacattcttgctggtgctatgaaatatatgtagctaggaaaagtgaaactctccatgatggaaaccaaaggtgaaatcaaactaac |
200 |
Q |
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| T |
29399331 |
atgcaaagaaagaaaacattcttgctggtgctatgaaatatatgtagctaggaaaagtgaaactctccatgatggaaaccaaaggtgaaatcaaactaac |
29399232 |
T |
|
| Q |
201 |
atcatagatcaaagctgagagaggtgatgacgatgatggtgaagatgatagttttgttagaattgaaggtaaaaggcgatgaagtgattgacgaatggtt |
300 |
Q |
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| T |
29399231 |
atcatagatcaaagctgagagaggtgatgacgatgatggtgaagatgatagttttgttagaattgaaggtaaaaggcgatgaagtgattgacgaatggtt |
29399132 |
T |
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| Q |
301 |
tcgaactgaagccaaaatggatcgacggtgttaacgttaatcgatggatctaaagggatgaggtttaagtctatttgagtgagttgagatgaggggaaag |
400 |
Q |
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| T |
29399131 |
tcgaactgaagccaaaatggatcgacggtgttaacgttaatcgatggatctaaagggatgaggtttaagtctatttgagtgagttgagatgaggggaaag |
29399032 |
T |
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| Q |
401 |
aagaacaaaactgagtgatgaggtctgattca |
432 |
Q |
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| T |
29399031 |
aagaacaaaactgagtgatgaggtctgattca |
29399000 |
T |
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