View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10336_low_1 (Length: 587)
Name: NF10336_low_1
Description: NF10336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10336_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 12 - 500
Target Start/End: Complemental strand, 11898442 - 11897954
Alignment:
| Q |
12 |
agcaaaggatataatgatgataagggcggattgaaaaggctcaaggtaccnnnnnnnttgtctagtgtgtaatataatatgactgataattcataaagaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11898442 |
agcaaaggatataatgatgataagggcggattgaaaaggctcaaggtaccaaaaaaattgtctagtgtgtaatataatatgactgataattcataaagaa |
11898343 |
T |
|
| Q |
112 |
ttaacggcaaaaaattcgagcaaaaatgacacaagacaaataacggagaaaataaattaatgggttgtctcccgttcaatgcgtgttttacatcttgaac |
211 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11898342 |
ttgacggcaaaaaattcgagcaaaaatgacacaagacaaataacggagaaaataaattaatgggttgtctctcgttcaatgcgtgttttacatcttgaac |
11898243 |
T |
|
| Q |
212 |
atggagaataagtctatgttgtgcccttgaacctcttcaaagcaggttcatcttcttcaactttcatttcccggatgcaatctttaacatgcttcagttt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11898242 |
atggagaataagtctatgttgtgcccttgaacctcttcaaagcaggttcatcttcttcaactttcattttccggatgcaatctttaacatgcttcagttt |
11898143 |
T |
|
| Q |
312 |
gtgtcgattcatcttagcatgccatttcatattgtcccagatctccacgagactacatacacatgttactgtgaatggtccataccaagcttgatcagtt |
411 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11898142 |
gtgtcgattcaccttagcatgccatttgatattgtcccagatctccacgagactacatacacatgttactgtgaatggtccataccaagcttgatgagtt |
11898043 |
T |
|
| Q |
412 |
caagtaggtggtaataggatgtgggatgcttttaacatgactatgtctccgcctctgaaaactggagtatctactttgctcccctgaat |
500 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11898042 |
caagtaggtggtaataggatgtgggatgcttttgacatgactatgtctccgcctctgaaaactggagtatctactttgctcccctgaat |
11897954 |
T |
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