View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10336_low_12 (Length: 390)
Name: NF10336_low_12
Description: NF10336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10336_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 142 - 385
Target Start/End: Complemental strand, 48159204 - 48158961
Alignment:
| Q |
142 |
ttgccaaatgttagtagcagagattcaactctaaaccacctacatataactctttaggtgtccccgcctatgccgccattgagctactcctccgatacag |
241 |
Q |
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| T |
48159204 |
ttgccaaatgttagtagcagatattcaactctaaaccacctacatataactctttaggtgtccctgcctatgccgccattgagctactcctccgatacag |
48159105 |
T |
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| Q |
242 |
atataagtgtttgtttggttccacttgtagaattatggaggtttgtaattgattctcagatgtttggttgctttccaatagaattgattcgatttgaagt |
341 |
Q |
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| T |
48159104 |
atataagtgtttgtttggttccacttgtagaattatggaggtttgtaattgattctcagatgtttggttgctttccagtagaattgattcgatttgaagt |
48159005 |
T |
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| Q |
342 |
tacatggatgcacacaaacataatcattttaccttcatctcact |
385 |
Q |
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| T |
48159004 |
tacatgaatgcacacaaacataatcattttaccttcaactcact |
48158961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 48159343 - 48159229
Alignment:
| Q |
17 |
caattagttgccatactggtttctattttaatgattgttccatcagctgatgctgttgatgcactcaaaacttgtgcttgtttgctcaaggaatgcaggt |
116 |
Q |
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| T |
48159343 |
caattagttgccatactggtttctattttaatgattgttccatcagctgatgctgttgatgcactcaaaacttgtgcttgtttgctcaaggaatgcaggt |
48159244 |
T |
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| Q |
117 |
atgctactataccac |
131 |
Q |
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| T |
48159243 |
atgctgctataccac |
48159229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 17111820 - 17111872
Alignment:
| Q |
288 |
aattgattctcagatgtttggttgctttccaatagaattgattcgatttgaag |
340 |
Q |
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| T |
17111820 |
aattgattctgacatgtttggttgctttcgagtagaattgattctacttgaag |
17111872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 15677938 - 15677886
Alignment:
| Q |
288 |
aattgattctcagatgtttggttgctttccaatagaattgattcgatttgaag |
340 |
Q |
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|||||||||| | |||||||||||||||| |||||||||||||| | |||||| |
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| T |
15677938 |
aattgattctgacatgtttggttgctttcaaatagaattgattctacttgaag |
15677886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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