View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10336_low_13 (Length: 371)
Name: NF10336_low_13
Description: NF10336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10336_low_13 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 26976253 - 26975900
Alignment:
| Q |
18 |
attcgaagtagcaatcgacaaaaacataaacaagtagcccaaataatcgcaaaaaacagtagcaggacctgctcatgtagaaaacaaaattcacattatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26976253 |
attcgaagtagcaatcgacaaaaacataaacaagtagcccaaataatcgcaaaaaacagtagcaggacctgctcatgtagaaaacaaaattcacattatt |
26976154 |
T |
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| Q |
118 |
gcggaatttcaaaattaaacagtgaatgtgataaaatcatataaatacctaaagcagcaagttcaattgaacttccttgaccaacaacagcggtatcaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26976153 |
gcggaatttcaaaattaaacagtgaatgtgataaaatcataaaaatacctaaagcagcaagttcaattgaacttccttgaccaacaacagcggtatcaat |
26976054 |
T |
|
| Q |
218 |
gagactcatcaacggtccacataaccaaagaccaatagcaggtccagtaaacaatacaatttccttcatctgaatccatatactttgctcaaccagtagt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26976053 |
gagactcatcaacggtccacataaccaaagaccaatagcaggtccagtaaacaatacaatttccttcatctgaatccatatactttgctcaaccagtagt |
26975954 |
T |
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| Q |
318 |
tccttcacttcttcttgttctttagaagaaacctggctgatttgttcttggtgt |
371 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26975953 |
tccttcacttcttcttcttctttagaagaaacctggctgatttgttcttggtgt |
26975900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 27005652 - 27005987
Alignment:
| Q |
18 |
attcgaagtagcaatcgacaaaaacataaacaagtagcccaaataatcgcaaaaaacagtagcaggacctgctcatgtagaaaacaaaattcacattatt |
117 |
Q |
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||||||||| |||||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27005652 |
attcgaagtggcaatcgacagaaacataaaagagtaacccaaataatcacaaaaaacagtagcaggacctgctcatgtagaaaacgaaattcacattatt |
27005751 |
T |
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| Q |
118 |
gcggaatttcaa-aattaaacagtgaatgtgataaaatcatataaatacctaaagcagcaagttcaattgaacttccttgaccaacaacagcggtatcaa |
216 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27005752 |
gcggaatttcaagaattaaacagtcaatgtgataaaatcatataaatacctaaagcagcaagttcaattgaacttccttgaccaacaacagctgtatcaa |
27005851 |
T |
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| Q |
217 |
tgagactcatcaacggtccacataaccaaagaccaatagcaggtccagtaaacaatacaatttccttcatctgaatccatatactttgctcaaccagtag |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
27005852 |
tgagactcatcaacggtccacataaccaaagaccaatagcaggtccagtaaacaatacaatttccttcatctgaatccatatactctgctcaacc---ag |
27005948 |
T |
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| Q |
317 |
ttccttcacttcttcttgttctttagaagaaacctggctgatttg |
361 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||| |
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| T |
27005949 |
ttccttcacttc------ttctttagaagaaacctcgctgatttg |
27005987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 26991206 - 26991519
Alignment:
| Q |
18 |
attcgaagtagcaatcgacaaaaacataaacaagtagcccaaataatcgcaaaaaacagtagcaggacctgctcatgtagaaaacaaaattcacattatt |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
26991206 |
attcgaagtagcaatcgacagaaacataaaagagtagcccaaataatcacaaaaaacagtagcaggacctgctcatgaagaaaacaaaattcaaattatt |
26991305 |
T |
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| Q |
118 |
gcggaatttcaa-aattaaacagtgaatgtgataaaatcatataaatacctaaagcagcaagttcaattgaacttccttgaccaacaacagcggtatcaa |
216 |
Q |
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| | |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
26991306 |
gggcaatttcaacaattaaacagtgaatgtcataaaatcataaaaatacctaaagcagcaagttcaatcgaacttccttgaccaacaacagcagtatcaa |
26991405 |
T |
|
| Q |
217 |
tgagactcatcaacggtccacataaccaaagaccaatagcaggtccagtaaacaatacaatttccttcatctgaatccatatactttgctcaaccagtag |
316 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| || |
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| T |
26991406 |
tgagactcatcaacggtccgcataaccaaagaccaattgcaggtccagtaaataaaacaatttccttcatctgaatccatatactctgctcaacc---ag |
26991502 |
T |
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| Q |
317 |
ttccttcacttcttctt |
333 |
Q |
| |
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||||||||||||||||| |
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| T |
26991503 |
ttccttcacttcttctt |
26991519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 161 - 300
Target Start/End: Original strand, 26946473 - 26946612
Alignment:
| Q |
161 |
aatacctaaagcagcaagttcaattgaacttccttgaccaacaacagcggtatcaatgagactcatcaacggtccacataaccaaagaccaatagcaggt |
260 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||| |||||| ||||| || | |||||||||||||||||||| |||||| ||| | |||||| |
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| T |
26946473 |
aatacctaaagcagcaagctcaattgaacttccctgaccaataacagcagtatcgattaaactcatcaacggtccacatatccaaagtccagttgcaggt |
26946572 |
T |
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| Q |
261 |
ccagtaaacaatacaatttccttcatctgaatccatatac |
300 |
Q |
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| T |
26946573 |
gctgtaaatttaacaatttccttcaattgaatccatatac |
26946612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 162 - 295
Target Start/End: Original strand, 26954273 - 26954406
Alignment:
| Q |
162 |
atacctaaagcagcaagttcaattgaacttccttgaccaacaacagcggtatcaatgagactcatcaacggtccacataaccaaagaccaatagcaggtc |
261 |
Q |
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||||||||||||||||| || |||||||||| |||||||||||||| ||||| ||||| ||||| | || |||||||||| | || ||||| |||| |
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| T |
26954273 |
atacctaaagcagcaagctcggttgaacttccctgaccaacaacagcagtatctatgaggctcatgagtggatcacataaccataatcccatagctggtc |
26954372 |
T |
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| Q |
262 |
cagtaaacaatacaatttccttcatctgaatcca |
295 |
Q |
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| T |
26954373 |
ctgtaaacttcacaatttccttcatttgattcca |
26954406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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