View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10336_low_14 (Length: 336)
Name: NF10336_low_14
Description: NF10336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10336_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 21 - 325
Target Start/End: Original strand, 29671875 - 29672179
Alignment:
| Q |
21 |
tctggtgcatcaatccaaatcatctcagaagaatcttcagcattctttgataaaaccccgaacctcgagactttctccttatcgtaaacaacaggcgacc |
120 |
Q |
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| T |
29671875 |
tctggtgcatcaatccaaatcatctcagaagaatcttcagcattcttggataaaaccccgaacctcgagactttctccttatcgtaaacaacaggcgacc |
29671974 |
T |
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| Q |
121 |
caccacggatcatttcacccaatttaaacacaacttgttgatcaggcacaacaacgaaattctcagtgatcgcgaagtcatgcatcatagtaggctgctc |
220 |
Q |
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| T |
29671975 |
caccacggatcatttcacccaatttaaacacaacttgttgatcaggcacaacaacgaaattctcagtgatcgcgaagtcatgcatcatagtaggctgctc |
29672074 |
T |
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| Q |
221 |
caacggaatctcaacgtccggagacttaactccggacgcatcaaaacgaaagtatttcaaataaggcttttgaactacgtcatagctcaaagcatacata |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29672075 |
caacggaatctcaacgtccggagacttaactccggacgcatcaaaacgaaagtatttcaaataaggcttttgaactacgtcatagctcaaagcatacata |
29672174 |
T |
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| Q |
321 |
ttctt |
325 |
Q |
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||||| |
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| T |
29672175 |
ttctt |
29672179 |
T |
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