View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10336_low_15 (Length: 303)
Name: NF10336_low_15
Description: NF10336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10336_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 38489625 - 38489406
Alignment:
| Q |
14 |
atcatcatcgatcttcttccctcattcttctaccttttcctcgctttctgctacctattgctcgctttctcctatccttttcttccatcaatcttcttcc |
113 |
Q |
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| T |
38489625 |
atcattatcgatcttcttccctcattcttctaccttttcctcgctttctgctacctattgctcgctttctcctatccttttcttccatcaatcttcttcc |
38489526 |
T |
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| Q |
114 |
tcgttgattgtaatgttcttgctggtttgattgtatataggaacactacaaatttagagatcaaaagttttacattcatatatagaaacactacaatttt |
213 |
Q |
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| T |
38489525 |
tcgttgattgtaatgttcttgctggtttgattgtatataggaacactacaaatttagagatcaaaagttttacattcatatatagaaacactacaatttt |
38489426 |
T |
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| Q |
214 |
gcagttgtttgttttcacaa |
233 |
Q |
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|||||||||||||||||||| |
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| T |
38489425 |
gcagttgtttgttttcacaa |
38489406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 232 - 299
Target Start/End: Complemental strand, 38489384 - 38489317
Alignment:
| Q |
232 |
aataagacatcaatcatattaaaaagtgttctttaccttcgtttgagttgaaggttgatgatgtccat |
299 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
38489384 |
aataagacatcaattatattaaaaagtgtcctttaccttcgtttgagttgaaggttgatgatttccat |
38489317 |
T |
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