View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10336_low_16 (Length: 291)

Name: NF10336_low_16
Description: NF10336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10336_low_16
NF10336_low_16
[»] chr7 (2 HSPs)
chr7 (1-273)||(1751415-1751687)
chr7 (179-277)||(4873738-4873838)
[»] chr1 (6 HSPs)
chr1 (69-237)||(7839834-7840003)
chr1 (81-197)||(26290154-26290273)
chr1 (69-277)||(3362934-3363144)
chr1 (213-277)||(27319250-27319316)
chr1 (69-210)||(8236799-8236941)
chr1 (186-259)||(15421791-15421864)
[»] chr5 (3 HSPs)
chr5 (69-268)||(4237208-4237408)
chr5 (9-268)||(20685464-20685725)
chr5 (5-46)||(4237139-4237180)
[»] chr4 (4 HSPs)
chr4 (213-259)||(53689727-53689773)
chr4 (203-264)||(17295095-17295156)
chr4 (179-249)||(36709118-36709188)
chr4 (213-269)||(24493670-24493726)
[»] chr3 (2 HSPs)
chr3 (171-259)||(17576591-17576679)
chr3 (213-268)||(6462033-6462090)
[»] chr6 (2 HSPs)
chr6 (214-280)||(34108350-34108417)
chr6 (203-259)||(23639237-23639293)
[»] scaffold0148 (1 HSPs)
scaffold0148 (212-264)||(13227-13279)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 1751415 - 1751687
Alignment:
Q  1 tacgttcgtggattcttgaaggaaacatgaaatatattagagaaacctatctttagacaagctgtattagataaaaatacaggcttaaattgtttatgat 100  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1751415 tacgttcgtggattcttaaaggaaacataaaatatattagagaaacttgtctttagacaagctgtattagataaaaatacaggcttaaattgtttatgat 1751514  T
Q  101 ttgttattaagacaaaccaataatcgtcatacgctttttataatctgaattttaaccaagaaactattcgacttctaaacttgatcttttctgctaacca 200  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1751515 ttgttattaagacaaaccaataatccccatacgctttttataatctgaattttaaccaagaaactattcgacttctaaacttgatcttttctgctaatca 1751614  T
Q  201 acattgaaaatgaaatcgataattacaataactctctgtggaacgatacttttactactcgatagaaccatac 273  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1751615 acattgaaaacgaaatcggtaattacaataactctctgtggaacgatacttttactactcgatagaaccatac 1751687  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 4873738 - 4873838
Alignment:
Q  179 acttgatcttttctgctaaccaacattgaaaatgaaatcgataattacaataactctctgtggaacgata--cttttactactcgatagaaccatacact 276  Q
    |||| |||||||| ||||| || ||||||||| ||||||  |||||||||||||||||||| ||||||||  ||| |||||||| |||||||| ||||||    
T  4873738 acttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtagaacgatattcttgtactactcaatagaaccgtacact 4873837  T
Q  277 t 277  Q
    |    
T  4873838 t 4873838  T

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Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 69 - 237
Target Start/End: Original strand, 7839834 - 7840003
Alignment:
Q  69 agataaaaatacaggcttaaattgtttatgatttgttattaagacaaaccaataatcgtcatacgctttttataatctgaattttaaccaagaaactatt 168  Q
    |||||||||||  ||||| |||||||| ||||||| ||||||||| |||||||| || ||||| | |||||||||||| |||||| || |||||||||||    
T  7839834 agataaaaatatgggcttgaattgtttgtgatttgctattaagacgaaccaatagtcctcatatgttttttataatctaaattttgacaaagaaactatt 7839933  T
Q  169 cgacttctaaacttg-atcttttctgctaaccaacattgaaaatgaaatcgataattacaataactctct 237  Q
    ||||||||||||||| | ||||||  |||| |||||||||||| ||||||||||||||||||||||||||    
T  7839934 cgacttctaaacttgaaccttttcaactaatcaacattgaaaacgaaatcgataattacaataactctct 7840003  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 197
Target Start/End: Complemental strand, 26290273 - 26290154
Alignment:
Q  81 aggcttaaattgtttatgatttgttattaagacaaaccaataatcgtcatac---gctttttataatctgaattttaaccaagaaactattcgacttcta 177  Q
    |||||| |||||||| || |||||||||||||| ||||||||||| ||| ||     |||||||||| |||||||||| |||||||||||||||||||||    
T  26290273 aggcttgaattgtttgtggtttgttattaagacgaaccaataatcctcaaacatttttttttataatatgaattttaatcaagaaactattcgacttcta 26290174  T
Q  178 aacttgatcttttctgctaa 197  Q
    ||||||| |||||| |||||    
T  26290173 aacttgaacttttcagctaa 26290154  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 69 - 277
Target Start/End: Complemental strand, 3363144 - 3362934
Alignment:
Q  69 agataaaaatacaggcttaaattgtttatgatttgttattaagacaaaccaataatcgtcatacgctttttata--atctgaattttaaccaagaaacta 166  Q
    |||| |||||| ||||||  ||||||  ||||||||||||| ||| |||||||||||   | |||||| |||||  |||||||||| |||||| |||||     
T  3363144 agatgaaaatataggcttcgattgttagtgatttgttattacgacgaaccaataatccctagacgcttcttatataatctgaatttaaaccaa-aaactg 3363046  T
Q  167 ttcgacttctaaa-cttgatcttttctgctaaccaacattgaaaatgaaatcgataattacaataactctctgtggaacgatacttttactactcgatag 265  Q
    ||  |  || ||  ||| |||||||| ||||| ||  |||||||| ||||||| ||||||||||||||||||||| ||| ||| || |||||||||||||    
T  3363045 ttgaaactcgaatgcttaatcttttcagctaatcacaattgaaaacgaaatcggtaattacaataactctctgtgaaacaatatttatactactcgatag 3362946  T
Q  266 aaccatacactt 277  Q
     ||| |||||||    
T  3362945 caccgtacactt 3362934  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 27319250 - 27319316
Alignment:
Q  213 aaatcgataattacaataactctctgtggaacgata--cttttactactcgatagaaccatacactt 277  Q
    |||||||||||||   ||||||||| |||| |||||  |||||||||||||||||||||||||||||    
T  27319250 aaatcgataattagtttaactctctatggatcgataatcttttactactcgatagaaccatacactt 27319316  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 210
Target Start/End: Original strand, 8236799 - 8236941
Alignment:
Q  69 agataaaaatacaggcttaaattgtttatgatttgttattaagacaaaccaataatcgtcatacgctttttataatctgaa-ttttaaccaagaaactat 167  Q
    ||||||||| | ||||||  ||||||  ||||||||||||| ||| | |||||||||   | |||| |||||||||||||| ||| ||||||||||||||    
T  8236799 agataaaaacataggcttggattgttagtgatttgttattacgacgagccaataatccctagacgc-ttttataatctgaactttaaaccaagaaactat 8236897  T
Q  168 tcgacttctaaact-tgatcttttctgctaaccaacattgaaaa 210  Q
       | ||||||||| |  ||||||||||||| || |||||||||    
T  8236898 cgaaattctaaactctagtcttttctgctaatcatcattgaaaa 8236941  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 15421791 - 15421864
Alignment:
Q  186 cttttctgctaaccaacattgaaaatgaaatcgataattacaataactctctgtggaacgatacttttactact 259  Q
    |||||| ||||| ||  ||||||||  ||||| ||||||||||||||||  |||||||| ||| ||||||||||    
T  15421791 cttttcagctaatcacaattgaaaagaaaatcaataattacaataactccatgtggaacaatatttttactact 15421864  T

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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 69 - 268
Target Start/End: Original strand, 4237208 - 4237408
Alignment:
Q  69 agataaaaatacaggcttaaattgtttatgatttgttattaagacaaaccaataatcgtcatacgctttttataatctgaattttaaccaag-aaactat 167  Q
    ||||||||||| |||||| |||||||| ||||||||| ||||||| |||||||||||   | |||| ||||||||||||||||||||||||| ||| | |    
T  4237208 agataaaaatataggcttgaattgtttgtgatttgttcttaagacgaaccaataatccctagacgc-ttttataatctgaattttaaccaagaaaattgt 4237306  T
Q  168 tcgacttctaa-acttgatcttttctgctaaccaacattgaaaatgaaatcgataattacaataactctctgtggaacgatacttttactactcgataga 266  Q
    |  ||||| || |||| || |||||  ||||  ||||||| ||| ||||||| ||||||||||||||||| ||| ||||||| |||||||||| ||||||    
T  4237307 tgaacttcgaatacttaatattttcaactaattaacattggaaacgaaatcggtaattacaataactctccgtgaaacgatatttttactacttgataga 4237406  T
Q  267 ac 268  Q
    ||    
T  4237407 ac 4237408  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 20685464 - 20685725
Alignment:
Q  9 tggattcttgaaggaaacatgaaatatattagagaaacctatctttagacaagctgtatt-------agataaaaatacaggcttaaattgtttatgatt 101  Q
    ||||||||  |||||||||||||||||| ||||||||| | |||||||| ||  || |||       ||||||||||| |||||| |||||||  |||||    
T  20685464 tggattctgaaaggaaacatgaaatataatagagaaacttgtctttagaaaa--tgaatttaacataagataaaaatataggcttgaattgttagtgatt 20685561  T
Q  102 tgttattaagacaaaccaataatcgtcatacgctttttataatctgaattttaaccaag-aaactattcgacttct-aaacttgatcttttctgctaacc 199  Q
    ||||| |||||  |||||||||||   |||||| ||||||||| ||||||||||||||| ||||| ||  |||||| ||||||||||   || ||||| |    
T  20685562 tgttaataagatgaaccaataatccctatacgc-ttttataatatgaattttaaccaagaaaactgttgaacttctaaaacttgatc---tcagctaatc 20685657  T
Q  200 aacattgaaaa-tgaaatcgataattacaataactctctgtggaacgatacttttactactcgatagaac 268  Q
    |||||||||||   |||| | ||||||||||||  ||||||||||||||| |||||||||| ||||||||    
T  20685658 aacattgaaaacaaaaattggtaattacaataa--ctctgtggaacgatatttttactacttgatagaac 20685725  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 4237139 - 4237180
Alignment:
Q  5 ttcgtggattcttgaaggaaacatgaaatatattagagaaac 46  Q
    ||||||||||||  |||||||||||||||||| |||||||||    
T  4237139 ttcgtggattctaaaaggaaacatgaaatataatagagaaac 4237180  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 53689773 - 53689727
Alignment:
Q  213 aaatcgataattacaataactctctgtggaacgatacttttactact 259  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||||||    
T  53689773 aaatcaataattacaataactctctgtggaatgatatttttactact 53689727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 17295156 - 17295095
Alignment:
Q  203 attgaaaatgaaatcgataattacaataactctctgtggaacgatacttttactactcgata 264  Q
    |||||||| ||||||| ||| |||||||||||| || ||||| ||| |||||||||||||||    
T  17295156 attgaaaaagaaatcggtaagtacaataactctttgaggaacaatatttttactactcgata 17295095  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 36709188 - 36709118
Alignment:
Q  179 acttgatcttttctgctaaccaacattgaaaatgaaatcgataattacaataactctctgtggaacgatac 249  Q
    |||| |||||||| | |||  ||||||||||| ||||| |||||||||||||||||| ||| |||| ||||    
T  36709188 acttaatcttttcagataattaacattgaaaacgaaattgataattacaataactctttgtagaaccatac 36709118  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 24493670 - 24493726
Alignment:
Q  213 aaatcgataattacaataactctctgtggaacgatacttttactac-tcgatagaacc 269  Q
    |||||| ||||||||| ||||| ||||||||||||| ||||||||| |||||||||||    
T  24493670 aaatcggtaattacaacaactccctgtggaacgata-ttttactacttcgatagaacc 24493726  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 17576679 - 17576591
Alignment:
Q  171 acttctaaacttgatcttttctgctaaccaacattgaaaatgaaatcgataattacaataactctctgtggaacgatacttttactact 259  Q
    |||||||||  ||| |||||| ||||| ||  ||| ||||  ||||| |||||||||| |||||| |||||||||||| ||||||||||    
T  17576679 acttctaaaactgaacttttcagctaatcacaatttaaaagaaaatcaataattacaacaactctttgtggaacgatatttttactact 17576591  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 6462033 - 6462090
Alignment:
Q  213 aaatcgataattacaataactctctgtggaacgata--cttttactactcgatagaac 268  Q
    ||||||||||||||||||||| |||| |||| ||||   |||||||||||||||||||    
T  6462033 aaatcgataattacaataactttctggggaatgatattattttactactcgatagaac 6462090  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 280
Target Start/End: Complemental strand, 34108417 - 34108350
Alignment:
Q  214 aatcgataattacaataactctctgtggaacgatacttttactac-tcgatagaaccatacacttacg 280  Q
    |||| |||||||||||||||| || |||||||||| ||||||||| | ||||||||| | ||||||||    
T  34108417 aatcaataattacaataactccctatggaacgatatttttactactttgatagaaccgtgcacttacg 34108350  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 23639293 - 23639237
Alignment:
Q  203 attgaaaatgaaatcgataattacaataactctctgtggaacgatacttttactact 259  Q
    ||||||||  ||||| |||||||||||||||| |||  |||||||| ||||||||||    
T  23639293 attgaaaagaaaatcaataattacaataactccctgcagaacgatatttttactact 23639237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 13227 - 13279
Alignment:
Q  212 gaaatcgataattacaataactctctgtggaacgatacttttactactcgata 264  Q
    ||||||| |||| | || ||||||||| ||||||||| |||||||||||||||    
T  13227 gaaatcggtaatcaaaacaactctctgaggaacgatatttttactactcgata 13279  T

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