View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10336_low_18 (Length: 267)
Name: NF10336_low_18
Description: NF10336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10336_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 2174311 - 2174038
Alignment:
| Q |
12 |
agagagagagaaataataattgggcttcatagacttttaaactgtgaattgattgttttattatttatttcaaggacgtgtatgtttgtcttatctatac |
111 |
Q |
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| T |
2174311 |
agagagagagaaataataattgggcttcatagacttttaaactgtgaattgattgttttattatttatttcaaggacgtgtatgtttgccttatcaatac |
2174212 |
T |
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| Q |
112 |
tactatgtatcacaatatcgtttaacgtg-------------------tattgagttgaaatagagatgatcatgcatcaatataatctagaaaattagt |
192 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2174211 |
tactatgtatcacaatatcgtttaacgtgtagtacgtatgtaataagctattgagttgaaatagagatgatcatgcatcaatataatctagaaaattagt |
2174112 |
T |
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| Q |
193 |
ccattgaaatagccgaatc--------------tatatatcttcattattttcctcatacttaggcatatattt |
252 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2174111 |
ccattgaaatagccgaatctatatatatatatatatatatcttcattattttcctcatacttaggcatatattt |
2174038 |
T |
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