View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10336_low_19 (Length: 266)
Name: NF10336_low_19
Description: NF10336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10336_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 53 - 266
Target Start/End: Original strand, 17319330 - 17319547
Alignment:
| Q |
53 |
cttccttatttcccgaccaatattctttatttgcatctttattcatcatcatcttcatcttaaacaaaaaccca-aaagatccatttccaaacccagctc |
151 |
Q |
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| T |
17319330 |
cttccttatttccctaccaatattcttcatttgcatctttattcatcatcatcttcatcttaaacaaaaacccagaaatatccatttccaaacccagctc |
17319429 |
T |
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| Q |
152 |
aatcataagccatgatccaatgcataacacacaattcaac---agaagctcatcataaatcacactacacaagttcataatcaatccaaatctataaaca |
248 |
Q |
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| T |
17319430 |
aatcataagccatgatccaatgcataacacacaattcaacaacagaagctcatcataaatcacactacacaagttcataatcaatccaaatctataaaca |
17319529 |
T |
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| Q |
249 |
acaactctttcaatcccc |
266 |
Q |
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| T |
17319530 |
acaactctttcaatcccc |
17319547 |
T |
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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 155
Target Start/End: Original strand, 9927908 - 9927996
Alignment:
| Q |
68 |
accaatattctttatttgcatctttattcatcatcatcttcatcttaaacaaaaaccca-aaagatccatttccaaacccagctcaatc |
155 |
Q |
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| T |
9927908 |
accaatcttcttcatctgcatctttattcatcttcatcttcatcttaagcaaaaacccagaaagatccatttccaaacccagctcaatc |
9927996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 9206665 - 9206753
Alignment:
| Q |
152 |
aatcataagccatgatccaatgcataacacacaattcaacagaagctcatcat-aaatcacactacacaagttcataatcaatccaaat |
239 |
Q |
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| T |
9206665 |
aatcataagtcatgatccaatgcataacacacaactcaacataagctcatcataaaatcacacaacacgagttcataatcaatccaaat |
9206753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 48867245 - 48867193
Alignment:
| Q |
70 |
caatattctttatttgcatctttatt-catcatcatcttcatcttaaacaaaa |
121 |
Q |
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| T |
48867245 |
caatcttctttatttgcatctttctttcatcttcatcttcatcttaaacaaaa |
48867193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 38472333 - 38472374
Alignment:
| Q |
101 |
tcatcttcatcttaaacaaaaaccc-aaaagatccatttcca |
141 |
Q |
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| T |
38472333 |
tcatcttcatcttaaacaaaaacccaaaaagatccatttcca |
38472374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 8537312 - 8537366
Alignment:
| Q |
68 |
accaatattctttatttgcatctttattcatcatcatcttcatcttaaacaaaaa |
122 |
Q |
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| T |
8537312 |
accaatcttcttcatgtgcatctttgttcatcttcatcttcatcttaaaaaaaaa |
8537366 |
T |
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