View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10336_low_24 (Length: 227)
Name: NF10336_low_24
Description: NF10336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10336_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7946704 - 7946931
Alignment:
| Q |
1 |
atctttctttcttttcannnnnnncaaagaaagtttcgcctgagtttctgtatttatttcattcatcattggacatccgagataccgatgtccaaaaaca |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7946704 |
atctttctttcttttcatttttttcaaagaaagtttcgcctgagttt-tatatttatttcattcatcattggacatccgagataccgatgtccaaaaaca |
7946802 |
T |
|
| Q |
101 |
tacatgtatatttccaaattccaattacaaatacattgttattg--------nnnnnnnnacatagattaaatttcgggtgtaatccaatcccacaaaac |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7946803 |
tacatgtatatttccaaattccaattacaaatacattgttattgttttttttacaattttacatagattaaatttcgggtgtaatccaatcccacaaaac |
7946902 |
T |
|
| Q |
193 |
cggcttttaaaacggttggttcttctctc |
221 |
Q |
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||||||||||||||||||||||| |||| |
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| T |
7946903 |
tggcttttaaaacggttggttcttatctc |
7946931 |
T |
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