View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10336_low_26 (Length: 203)

Name: NF10336_low_26
Description: NF10336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10336_low_26
NF10336_low_26
[»] chr1 (12 HSPs)
chr1 (11-188)||(9299955-9300132)
chr1 (11-188)||(9257578-9257755)
chr1 (11-162)||(9364284-9364435)
chr1 (19-188)||(9466811-9466980)
chr1 (11-162)||(9337425-9337576)
chr1 (16-162)||(9242614-9242760)
chr1 (16-164)||(8926836-8926984)
chr1 (32-164)||(8939262-8939394)
chr1 (16-185)||(8962168-8962337)
chr1 (52-164)||(8861911-8862023)
chr1 (52-167)||(8979311-8979426)
chr1 (82-166)||(9070051-9070135)
[»] chr3 (1 HSPs)
chr3 (16-188)||(9171358-9171530)
[»] scaffold0690 (1 HSPs)
scaffold0690 (11-185)||(1470-1644)
[»] chr6 (1 HSPs)
chr6 (11-185)||(15910462-15910636)


Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 9300132 - 9299955
Alignment:
Q  11 gagagatgaatttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgag 110  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9300132 gagaaatgaatttctgcaacgaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgag 9300033  T
Q  111 atggtggattttgcccattgttcccacttcatttatgaactccttcccatctccttcagcgttattgagcatcttaac 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9300032 atggtggattttgcccattgttcccacttcatttatgaactccttcccatctccttcagcgttattgagcatcttaac 9299955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 11 - 188
Target Start/End: Original strand, 9257578 - 9257755
Alignment:
Q  11 gagagatgaatttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgag 110  Q
    |||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  9257578 gagaaatgaatttctgcaacgaaccatttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaagcggacagcattgag 9257677  T
Q  111 atggtggattttgcccattgttcccacttcatttatgaactccttcccatctccttcagcgttattgagcatcttaac 188  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  9257678 atggtggattttacccatagttcccacttcatttatgaactccttcccatctccttctgcgttattgatcatcttaac 9257755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 11 - 162
Target Start/End: Complemental strand, 9364435 - 9364284
Alignment:
Q  11 gagagatgaatttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgag 110  Q
    |||| ||||||||||||||| ||||| |||  || ||||||||||||| ||||||| |||| ||||| || || |||||||||||||| || ||||||||    
T  9364435 gagaaatgaatttctgcaacgaaccatttgaaaaaaagtcatagactaaagcacgacgaaaaccatctgcgcagaagccaagcaaacgaacgacattgag 9364336  T
Q  111 atggtggattttgcccattgttcccacttcatttatgaactccttcccatct 162  Q
    |||||| ||||||||||| |||||||||||||||||||| ||||||||||||    
T  9364335 atggtgaattttgcccatggttcccacttcatttatgaattccttcccatct 9364284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 9466811 - 9466980
Alignment:
Q  19 aatttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggtgga 118  Q
    |||||||||||  |||||||||| || |  || ||||||| | | || | ||||||||| || || ||||||||||||||||||||||| ||||| ||||    
T  9466811 aatttctgcaaagaaccacttggaaaaagatcgtagactaaaccgcggtaaaatccatcagcgcagaagccaagcaaacggacaacattaagatgatgga 9466910  T
Q  119 ttttgcccattgttcccacttcatttatgaactccttcccatctccttcagcgttattgagcatcttaac 188  Q
    |||| ||||| |||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||    
T  9466911 tttttcccatagttcccacttcatttatgaactccttaccatctccctcagtgttattgagcatcttaac 9466980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 162
Target Start/End: Complemental strand, 9337576 - 9337425
Alignment:
Q  11 gagagatgaatttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgag 110  Q
    |||| ||||||||||||||| ||||| |||  || ||||||||||||| ||||||| |||| ||||| || || ||||| |||||||| || ||||||||    
T  9337576 gagaaatgaatttctgcaacgaaccatttgaaaaaaagtcatagactaaagcacgacgaaaaccatctgcgcagaagccgagcaaacgaacgacattgag 9337477  T
Q  111 atggtggattttgcccattgttcccacttcatttatgaactccttcccatct 162  Q
    |||||| ||||||||||| |||||||||||||||||||| ||||||||||||    
T  9337476 atggtgaattttgcccatggttcccacttcatttatgaattccttcccatct 9337425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 9242614 - 9242760
Alignment:
Q  16 atgaatttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggt 115  Q
    ||||||||||||||| ||||| ||||||| ||||||||||||| ||||||  |||||||||| || ||  ||||||||||||| || ||||| ||||| |    
T  9242614 atgaatttctgcaacgaaccatttgggaaaaagtcatagactaaagcacggcgaaatccatccgcgcagtagccaagcaaacgaacgacatttagatgat 9242713  T
Q  116 ggattttgcccattgttcccacttcatttatgaactccttcccatct 162  Q
    | || |||||||| |||||||||||||||||||| ||||||||||||    
T  9242714 gaatcttgcccatggttcccacttcatttatgaattccttcccatct 9242760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 8926984 - 8926836
Alignment:
Q  16 atgaatttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggt 115  Q
    ||||| || |||||| ||||| | ||||| |||||||| || |||||||||| ||||||||||||||||||||||||||| || |||||||| | ||| |    
T  8926984 atgaagttttgcaacgaaccattcgggaaaaagtcataaaccagagcacgataaaatccatcggcacaaaagccaagcaaccgaacaacattaacatgat 8926885  T
Q  116 ggattttgcccattgttcccacttcatttatgaactccttcccatctcc 164  Q
    ||||||| ||||| |||||||| ||||||||||||||  ||||||||||    
T  8926884 ggatttttcccatagttcccacctcatttatgaactcactcccatctcc 8926836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 32 - 164
Target Start/End: Complemental strand, 8939394 - 8939262
Alignment:
Q  32 aaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggtggattttgcccattgt 131  Q
    ||||| ||||||| |||||||| || | |||||||| ||||||||||||||||||||||||||| ||||||||||| | ||| || ||||| ||||| ||    
T  8939394 aaccatttgggaaaaagtcataaaccaaagcacgataaaatccatcggcacaaaagccaagcaaccggacaacattaacatgatgaatttttcccatagt 8939295  T
Q  132 tcccacttcatttatgaactccttcccatctcc 164  Q
    |||||||||||||||||||||  ||||||||||    
T  8939294 tcccacttcatttatgaactctctcccatctcc 8939262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 8962337 - 8962168
Alignment:
Q  16 atgaatttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggt 115  Q
    ||||| || |||||| ||||| | ||||| |||||||| || | |||||||| ||||||||| || ||||||||||| || ||||||||||| | ||| |    
T  8962337 atgaaattttgcaacgaaccattagggaaaaagtcataaaccaaagcacgataaaatccatcagcgcaaaagccaagtaaccggacaacattaacatgat 8962238  T
Q  116 ggattttgcccattgttcccacttcatttatgaactccttcccatctccttcagcgttattgagcatctt 185  Q
    ||||||| ||||| ||||| |||||||||||||||||  ||||||||||||| |  ||||| ||||||||    
T  8962237 ggatttttcccatagttcctacttcatttatgaactctctcccatctccttctgtattattaagcatctt 8962168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 52 - 164
Target Start/End: Original strand, 8861911 - 8862023
Alignment:
Q  52 tagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggtggattttgcccattgttcccacttcatttatgaact 151  Q
    ||||| ||||| || |||| |||||| || || |||||||||||||| || || ||||  |||||||||||||||||  ||||||||||||| |||||||    
T  8861911 tagacaagagcgcggtgaattccatctgcgcagaagccaagcaaacgaaccacgttgatgtggtggattttgcccataattcccacttcattgatgaact 8862010  T
Q  152 ccttcccatctcc 164  Q
    | ||||| |||||    
T  8862011 ctttcccttctcc 8862023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 167
Target Start/End: Original strand, 8979311 - 8979426
Alignment:
Q  52 tagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggtggattttgcccattgttcccacttcatttatgaact 151  Q
    ||||| ||| ||||||||| ||| || ||||| ||||||||||| || ||||||||||  ||||||||||| |||||  ||||||||||  | |||||||    
T  8979311 tagacaagaacacgatgaattccctctgcacagaagccaagcaatcgaacaacattgatgtggtggatttttcccataattcccacttcgctaatgaact 8979410  T
Q  152 ccttcccatctccttc 167  Q
    | ||||| ||||||||    
T  8979411 ctttcccgtctccttc 8979426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 9070051 - 9070135
Alignment:
Q  82 caaaagccaagcaaacggacaacattgagatggtggattttgcccattgttcccacttcatttatgaactccttcccatctcctt 166  Q
    ||||||||||||||||| || ||||||| |||||| |||||||||||  || |||||||| | |||||||| ||||| |||||||    
T  9070051 caaaagccaagcaaacgaaccacattgatatggtgaattttgcccataatttccacttcagtgatgaactctttcccttctcctt 9070135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 9171530 - 9171358
Alignment:
Q  16 atgaatttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggt 115  Q
    ||||||||||||||  ||||| ||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  9171530 atgaatttctgcaaagaaccatttgggaaaaaatcatagactagagcacgatgaaatccatcggcgcaaaagccaagcaaacggacaacatttagatggt 9171431  T
Q  116 ggattttgcccattgttcccacttcatttatgaactccttcccatctccttcagcgttattgagcatcttaac 188  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| || | |||||| |||||||||||    
T  9171430 ggattttgcccatagttcccacttcatttatgaactccttcccatctccctctgtgttatttagcatcttaac 9171358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 1644 - 1470
Alignment:
Q  11 gagagatgaatttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgag 110  Q
    |||| ||||||||||| ||| ||||| |||| || |||||||| |||| ||||||| |||| ||||| || ||||||||||||||||| || ||||||||    
T  1644 gagatatgaatttctgtaacgaaccatttggaaaaaagtcataaactaaagcacgacgaaaaccatctgcgcaaaagccaagcaaacgaacgacattgag 1545  T
Q  111 atggtggattttgcccattgttcccacttcatttatgaactccttcccatctccttcagcgttattgagcatctt 185  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||| || || ||||| || |||||    
T  1544 atggtggattttgcccatggttcccacttcatttatgaattccttcccatctccctctgcattattaagaatctt 1470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 185
Target Start/End: Original strand, 15910462 - 15910636
Alignment:
Q  11 gagagatgaatttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgag 110  Q
    |||| |||||||| || ||| ||||| |||| || |||||||| |||| |||||||||||| ||||| |  |||||||| |||||||| || ||||||||    
T  15910462 gagatatgaatttttgtaacgaaccatttggaaaaaagtcataaactaaagcacgatgaaaaccatctgagcaaaagccgagcaaacgaacgacattgag 15910561  T
Q  111 atggtggattttgcccattgttcccacttcatttatgaactccttcccatctccttcagcgttattgagcatctt 185  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||| || || ||||| || |||||    
T  15910562 atggtggattttgcccatggttcccacttcatttatgaattccttcccatctccctctgcattattaagaatctt 15910636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University