View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10336_low_5 (Length: 463)
Name: NF10336_low_5
Description: NF10336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10336_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 76 - 457
Target Start/End: Complemental strand, 24734911 - 24734529
Alignment:
| Q |
76 |
tgcaaaatttggtagtagaggcctgatgggatacctagcaacaacatagtccccagcacttctccataaataaataatatgtttccaatccatgttttat |
175 |
Q |
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| T |
24734911 |
tgcaaaatttggtagtagaggcctgatgggattcctagcaacaacatagtccccagcacttctccataaataaataatatgtttccaatccatgttttat |
24734812 |
T |
|
| Q |
176 |
ttttattttaactccaaccatctgtaagttaaaagaattgtcacaagaagcggtgaacaccaacgaaa-gattgtacttaacagtgccaacatgaaaatg |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| |||||||||| |||| |
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| T |
24734811 |
ttttattttaactccaaccatctgtaagttaaaagaattgtcacaagaagcagtgaacaccaacaaaaagattgtacttaacagggccaacatgacaatg |
24734712 |
T |
|
| Q |
275 |
ttatccaatttactattctgattatgaatttggcaatgttgatgctccaattcaccatgaccaataggtggatgcatcttctcacacctagcatgtggtg |
374 |
Q |
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| T |
24734711 |
ttatccaatttactattctgattatgaatttggcaatgtcgatgctccaattcaccatgaccaataagtggatgcatcttctcacacctagcatgtggtg |
24734612 |
T |
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| Q |
375 |
cattatagctaaagaatgaaaaaacacatgaaatgttgtcatgaacaagcacagtcggtccattgaaaccatatctctgctcc |
457 |
Q |
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| T |
24734611 |
cattatagctaaagaatgaaaaaacacatgaaatgttgtcatgaacaagcacagtcggtccattgaaaccatatctcttctcc |
24734529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 24734952 - 24734907
Alignment:
| Q |
20 |
atagaattaccaactaagaaaacaatgttgaatgatttagctgcaa |
65 |
Q |
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| T |
24734952 |
atagaattaccacctaagaaaacaatgttgaattatttagctgcaa |
24734907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 43 - 216
Target Start/End: Complemental strand, 6102798 - 6102616
Alignment:
| Q |
43 |
aatgttgaatgatttagctgcaacattttgccttgcaaaatttggtagtagaggcctgatgggatacctagcaacaacatagtcccca-------gcact |
135 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| ||||| |
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| T |
6102798 |
aatgttgaatgatttaggtgcaacattttgccttgcaaaatttggtagtagaggcctgattggattcctagcaacaacatagtctccactctccagcact |
6102699 |
T |
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| Q |
136 |
tctccataaataaataatatgtttccaatccatgtttta--tttttattttaactccaaccatctgtaagttaaaagaattgt |
216 |
Q |
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| T |
6102698 |
tctccataaataaataatatgtttccaatccaatttttatttttttattttaactccaaccatctgtaagttaaaagaattgt |
6102616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 3652420 - 3652347
Alignment:
| Q |
34 |
taagaaaacaatgttgaatgatttagctgcaacattttgccttgcaaaatttggtagtagaggcctgatgggat |
107 |
Q |
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||||||||||| |||||||||||||| |||| ||| ||| |||||| ||||||| || |||||||| ||||||| |
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| T |
3652420 |
taagaaaacaaagttgaatgatttagatgcatcatattgtcttgcataatttggcagcagaggccttatgggat |
3652347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 368
Target Start/End: Complemental strand, 6102556 - 6102519
Alignment:
| Q |
331 |
atgaccaataggtggatgcatcttctcacacctagcat |
368 |
Q |
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| T |
6102556 |
atgaccaataggtggatgcatcttctcacacctagcat |
6102519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 6102601 - 6102557
Alignment:
| Q |
260 |
gccaacatgaaaatgttatccaatttactattctgattatgaatt |
304 |
Q |
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| T |
6102601 |
gccaacatgacaaagttatccaatttactattctgattatgaatt |
6102557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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