View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10336_low_6 (Length: 448)

Name: NF10336_low_6
Description: NF10336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10336_low_6
NF10336_low_6
[»] chr6 (14 HSPs)
chr6 (129-320)||(7968066-7968261)
chr6 (305-429)||(7967934-7968054)
chr6 (1-127)||(7968661-7968789)
chr6 (6-134)||(4409106-4409236)
chr6 (6-134)||(15119878-15120007)
chr6 (1-129)||(12738402-12738530)
chr6 (6-120)||(8305974-8306090)
chr6 (6-134)||(18043251-18043380)
chr6 (32-134)||(29482529-29482631)
chr6 (32-125)||(14910543-14910636)
chr6 (1-134)||(19860211-19860344)
chr6 (1-60)||(24438809-24438868)
chr6 (94-129)||(23574394-23574429)
chr6 (94-134)||(24438720-24438760)
[»] chr8 (9 HSPs)
chr8 (1-134)||(2085902-2086037)
chr8 (1-134)||(17775613-17775748)
chr8 (1-134)||(18040640-18040775)
chr8 (1-134)||(24033670-24033802)
chr8 (1-134)||(32009173-32009306)
chr8 (1-134)||(10532949-10533082)
chr8 (1-129)||(18574185-18574314)
chr8 (32-128)||(7454832-7454926)
chr8 (33-134)||(7999590-7999690)
[»] chr2 (8 HSPs)
chr2 (1-134)||(26159193-26159328)
chr2 (1-134)||(41266355-41266491)
chr2 (1-134)||(23755978-23756114)
chr2 (1-134)||(3770166-3770300)
chr2 (7-129)||(25134098-25134220)
chr2 (32-134)||(23929736-23929837)
chr2 (32-119)||(27347109-27347196)
chr2 (1-128)||(29568222-29568349)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-134)||(47575-47710)
[»] chr7 (7 HSPs)
chr7 (8-135)||(22705517-22705646)
chr7 (6-134)||(22703806-22703936)
chr7 (1-134)||(9549128-9549263)
chr7 (1-134)||(21802356-21802490)
chr7 (1-134)||(30770346-30770478)
chr7 (9-134)||(29164764-29164889)
chr7 (82-134)||(2250151-2250202)
[»] chr1 (3 HSPs)
chr1 (1-129)||(19967583-19967712)
chr1 (9-134)||(19442270-19442397)
chr1 (32-129)||(8990926-8991021)
[»] scaffold0989 (1 HSPs)
scaffold0989 (9-134)||(1681-1808)
[»] chr4 (6 HSPs)
chr4 (1-134)||(12885186-12885320)
chr4 (1-134)||(10985872-10986002)
chr4 (1-134)||(3270452-3270586)
chr4 (1-54)||(10271546-10271599)
chr4 (82-134)||(3268322-3268374)
chr4 (80-134)||(21332704-21332757)
[»] chr5 (8 HSPs)
chr5 (6-129)||(8244421-8244546)
chr5 (1-134)||(22922201-22922333)
chr5 (29-134)||(23495284-23495388)
chr5 (80-134)||(19330052-19330104)
chr5 (82-128)||(5931178-5931224)
chr5 (82-134)||(22922798-22922848)
chr5 (80-134)||(41037814-41037866)
chr5 (81-129)||(28068188-28068234)
[»] chr3 (2 HSPs)
chr3 (4-134)||(22914962-22915092)
chr3 (1-134)||(1997913-1998046)
[»] scaffold0150 (1 HSPs)
scaffold0150 (6-129)||(30222-30346)
[»] scaffold0083 (1 HSPs)
scaffold0083 (1-127)||(4363-4489)
[»] scaffold0280 (1 HSPs)
scaffold0280 (32-134)||(1200-1302)
[»] scaffold0058 (2 HSPs)
scaffold0058 (47-134)||(1560-1648)
scaffold0058 (32-129)||(15303-15400)
[»] scaffold0008 (2 HSPs)
scaffold0008 (32-134)||(253251-253353)
scaffold0008 (32-128)||(242611-242707)
[»] scaffold0299 (1 HSPs)
scaffold0299 (6-134)||(19061-19190)
[»] scaffold0002 (1 HSPs)
scaffold0002 (94-134)||(391459-391499)
[»] scaffold0042 (1 HSPs)
scaffold0042 (94-134)||(74845-74885)


Alignment Details
Target: chr6 (Bit Score: 159; Significance: 2e-84; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 129 - 320
Target Start/End: Complemental strand, 7968261 - 7968066
Alignment:
Q  129 cattggtcgcaaaggatgtgtcctggcaatggaactacgatccattgaagattttgcaaatatctaaactgaattgggtcctggaaatggaactcaagtt 228  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7968261 cattggtcgcaaaggatgtgtcctgggaatggaactacgatccattgatgattttgcaaatatctaaactgaattgggtcctggaaatggaactaaagtt 7968162  T
Q  229 taac----taaaggatgtgtttatcattcattgtaacttctcaaacgatacagattttgccattatctataagcatgatctttgcagtccataatt 320  Q
    ||||    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7968161 taactaattaaaggatgtgtttatcattcattgcaacttctcaaaggatacagattttgccattatctataagcatgatctttgcagtccataatt 7968066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 305 - 429
Target Start/End: Complemental strand, 7968054 - 7967934
Alignment:
Q  305 tttgcagtccataattaatacacagacctagcctaattgaacaccaacttaacttgtaaaccatgattcatataattgttatatatgaagacgatgatta 404  Q
    ||||||||| ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7968054 tttgcagtctataattaatacacagacctagcctaa----acaccaacttaacttgtaaaccatgattcatataattgttatatatgaagacgatgatta 7967959  T
Q  405 tttaataaggattgactcaaggtgt 429  Q
    |||||||||||||||||||||||||    
T  7967958 tttaataaggattgactcaaggtgt 7967934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 7968789 - 7968661
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagaga 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||  ||| || |||||||||||||||||||    
T  7968789 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtctacctgcaggcactccgacgctcaagtaagtagagatcggagaga 7968690  T
Q  99 gtgaaggtttagaggaagagatagattct 127  Q
    |||| |||| ||||||| |||||||||||    
T  7968689 gtgagggttaagaggaaaagatagattct 7968661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 4409106 - 4409236
Alignment:
Q  6 agtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagagagtgaa 103  Q
    |||||||||||||||||||||| || |||||||||||||||||| |||| ||||| | |||||||||   || || |||||||||||| ||||||||||     
T  4409106 agtggtggtgaaatgcgccaaaatgcttcttggagcggatggggtgtgtgtacctgcaggcactccgacactcaagtaagtagagatcagagagagtgag 4409205  T
Q  104 ggtttagaggaagagatagattctacattgg 134  Q
    |||||||||||||||||||||||||| ||||    
T  4409206 ggtttagaggaagagatagattctaccttgg 4409236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 6 - 134
Target Start/End: Complemental strand, 15120007 - 15119878
Alignment:
Q  6 agtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagagagtgaa 103  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| | |||||||||  ||| || |||||||||||| |||||||||      
T  15120007 agtggtggtgaaatgcgccaaaatgtttcttggagcggatg-ggggtgtgtacctgcaggcactccgacgctcaagtaagtagagatcagagagagtggg 15119909  T
Q  104 ggtttagaggaagagatagattctacattgg 134  Q
    |||||||| ||||||||||||||||| ||||    
T  15119908 ggtttagatgaagagatagattctaccttgg 15119878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 12738402 - 12738530
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagaga 98  Q
    |||| |||||||||||||||||||||| || |||||||||||||||| |||||| ||||| | |||||||||  ||| || ||||||||||||  |||||    
T  12738402 gtttgagtggtggtgaaatgcgccaaaatgcttcttggagcggatggagggtgtgtacctgcaggcactccgacgctcaagtaagtagagatc--agaga 12738499  T
Q  99 gtgaaggtttagaggaagagatagattctac 129  Q
    |||  ||||||||||||||||||||||||||    
T  12738500 gtgggggtttagaggaagagatagattctac 12738530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 6 - 120
Target Start/End: Original strand, 8305974 - 8306090
Alignment:
Q  6 agtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagagagtgaa 103  Q
    ||||||||||||||||  |||| || ||||| ||||||||||||||||| ||||| | |||||||||  ||| || |||||||||||| ||||||||||     
T  8305974 agtggtggtgaaatgcaacaaaatgcttctttgagcggatggggggtgtgtacctgcaggcactccgacgctcaagtaagtagagatcagagagagtgag 8306073  T
Q  104 ggtttagaggaagagat 120  Q
    |||||||||||||||||    
T  8306074 ggtttagaggaagagat 8306090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 18043251 - 18043380
Alignment:
Q  6 agtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagagagtgaa 103  Q
    ||||||||| |||||||||||| || |||||||||||| |||||| ||| ||||| | ||||||| |  ||| || |||||||| ||| ||||||||||     
T  18043251 agtggtggtaaaatgcgccaaattgcttcttggagcggctggggg-tgtgtacctgcaggcactctgacgctcaagtaagtagaaatcagagagagtgag 18043349  T
Q  104 ggtttagaggaagagatagattctacattgg 134  Q
    |||||||||||||||||| ||||||| ||||    
T  18043350 ggtttagaggaagagataaattctaccttgg 18043380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 134
Target Start/End: Original strand, 29482529 - 29482631
Alignment:
Q  32 ttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagagagtgaaggtttagaggaagagatagattctac 129  Q
    |||||||||| || ||||||||| ||||| | ||| |||||  ||| || ||||||||||||  ||||||||  ||||||||||||||||||||||||||    
T  29482529 ttcttggagcagacggggggtgtgtacctgcaggcgctccgacgctcaagtaagtagagatc--agagagtgggggtttagaggaagagatagattctac 29482626  T
Q  130 attgg 134  Q
     ||||    
T  29482627 cttgg 29482631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 14910543 - 14910636
Alignment:
Q  32 ttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagagagtgaaggtttagaggaagagatagatt 125  Q
    |||||||||| |||||||||||| ||| | | |||||||||  ||| || ||||||||||||  ||||||||| ||||||||||||||| ||||||    
T  14910543 ttcttggagcagatggggggtgtgtacatgcaggcactccgacgctcaagtaagtagagatc--agagagtgagggtttagaggaagagctagatt 14910636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 19860344 - 19860211
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagaga 98  Q
    |||| |||||||||||||||||||||| || ||| |||||||||| ||||||||    ||   ||||||| |  ||| || ||||||||||||  |||||    
T  19860344 gtttgagtggtggtgaaatgcgccaaaatgcttcctggagcggattgggggtgtggctctgtaggcactctgacgctcaagtaagtagagatc--agaga 19860247  T
Q  99 gtgaaggtttagaggaagagatagattctacattgg 134  Q
    |||| |||||||||||| ||||| ||||||| ||||    
T  19860246 gtgacggtttagaggaatagataaattctaccttgg 19860211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 24438868 - 24438809
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacct 60  Q
    |||| |||||||||||||||||||||| || |||||||||| |||| ||||||| |||||    
T  24438868 gtttcagtggtggtgaaatgcgccaaaatgcttcttggagcagatgtggggtgtctacct 24438809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 129
Target Start/End: Original strand, 23574394 - 23574429
Alignment:
Q  94 agagagtgaaggtttagaggaagagatagattctac 129  Q
    ||||||||| ||||||||||||||||||||||||||    
T  23574394 agagagtgagggtttagaggaagagatagattctac 23574429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 24438760 - 24438720
Alignment:
Q  94 agagagtgaaggtttagaggaagagatagattctacattgg 134  Q
    ||||||||| |||||||||||||||||||||| ||| ||||    
T  24438760 agagagtgagggtttagaggaagagatagattataccttgg 24438720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 2086037 - 2085902
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagaga 98  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | |||||||||  ||| || |||||||||||| ||||||    
T  2086037 gtttgagtggtggtgaaatgcgccaaagtgcttcttggagcggatggggggtgtgtacctgcaggcactccgatgctcaagtaagtagagatcagagaga 2085938  T
Q  99 gtgaaggtttagaggaagagatagattctacattgg 134  Q
    |||| |||||||||||||||||||||||||| ||||    
T  2085937 gtgagggtttagaggaagagatagattctaccttgg 2085902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 17775613 - 17775748
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagaga 98  Q
    |||| |||||||||||||||||||||| || ||||||||||||||||||||||| ||||| | |||||| ||  ||| || |||||||||||| ||||||    
T  17775613 gttttagtggtggtgaaatgcgccaaaatgcttcttggagcggatggggggtgtgtacctgcaggcacttcgacgctcaagtaagtagagatcagagaga 17775712  T
Q  99 gtgaaggtttagaggaagagatagattctacattgg 134  Q
    |||| |||||||||||||||||||||||||| ||||    
T  17775713 gtgagggtttagaggaagagatagattctaccttgg 17775748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 18040775 - 18040640
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagaga 98  Q
    |||| ||||||||||||||||||  || || ||||| ||||||||| ||||||| ||||| | |||||||||  ||| || |||| ||||||| ||||||    
T  18040775 gtttgagtggtggtgaaatgcgctgaaatgcttcttagagcggatgaggggtgtgtacctgcaggcactccgacgcttaagtaagcagagatcagagaga 18040676  T
Q  99 gtgaaggtttagaggaagagatagattctacattgg 134  Q
    |||||||||||||||||||||| |||||||| ||||    
T  18040675 gtgaaggtttagaggaagagattgattctaccttgg 18040640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 24033670 - 24033802
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccggc--taaaataagtagagatcggagaga 98  Q
    |||| |||||||||||||||||||||| || |||||||||| |||||||| ||| ||||| | ||||||| | |  | || |||||||||||   |||||    
T  24033670 gtttgagtggtggtgaaatgcgccaaaatgcttcttggagcagatggggg-tgtgtacctgcaggcactctgacactcaagtaagtagagatt--agaga 24033766  T
Q  99 gtgaaggtttagaggaagagatagattctacattgg 134  Q
    ||||||||||||||||||||||||||||||||||||    
T  24033767 gtgaaggtttagaggaagagatagattctacattgg 24033802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 32009306 - 32009173
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagaga 98  Q
    |||| |||||||||||||||||||| | || ||||||||||||||||||| ||| ||||| | |||||||||  ||| || ||||||||||||  |||||    
T  32009306 gtttgagtggtggtgaaatgcgccaga-tgcttcttggagcggatggggg-tgtgtacctgcaggcactccgacgctcaagtaagtagagatcatagaga 32009209  T
Q  99 gtgaaggtttagaggaagagatagattctacattgg 134  Q
    |||| |||||||||||||||||||||| ||| ||||    
T  32009208 gtgagggtttagaggaagagatagattttaccttgg 32009173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 10533082 - 10532949
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagaga 98  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||  ||||||| ||||| | ||||||| |  ||| || |||||||||||| ||| ||    
T  10533082 gtttaagtggtggtgaaatgcgccaaagttttttttggagcggat--ggggtgtgtacctgcaggcactcagacgctcaagtaagtagagatcagaggga 10532985  T
Q  99 gtgaaggtttagaggaagagatagattctacattgg 134  Q
     ||| |||||||| ||||||||| ||||||| ||||    
T  10532984 atgagggtttagatgaagagataaattctaccttgg 10532949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 18574314 - 18574185
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagaga 98  Q
    |||| |||||||||||||||||| ||| || ||||||||||||||| ||| ||| ||||| |   |||||||  ||| || ||||||||||||  |||||    
T  18574314 gtttgagtggtggtgaaatgcgctaaaatgcttcttggagcggatgaggg-tgtgtacctgcaaacactccgacgctcaagtaagtagagatcaaagaga 18574216  T
Q  99 gtgaaggtttagaggaagagatagattctac 129  Q
    ||||  |||||||||||||||||||||||||    
T  18574215 gtgagagtttagaggaagagatagattctac 18574185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 7454926 - 7454832
Alignment:
Q  32 ttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagagagtgaaggtttagaggaagagatagattcta 128  Q
    |||||||||||||||||| ||||  |||| | |||||||||  ||| || ||||||||||||  ||||||||| |||||| ||||||||||||||||||    
T  7454926 ttcttggagcggatggggtgtgt--acctgcaggcactccgacgctcaagtaagtagagatc--agagagtgagggtttacaggaagagatagattcta 7454832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 134
Target Start/End: Original strand, 7999590 - 7999690
Alignment:
Q  33 tcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagagagtgaaggtttagaggaagagatagattctaca 130  Q
    |||||||||||||||||| ||| ||||| |  ||||||||  ||| || | ||||||||||  ||||||||| ||||||||||||||||||||||||||     
T  7999590 tcttggagcggatggggg-tgtgtacctgcatgcactccgatgctcaagtcagtagagatc--agagagtgagggtttagaggaagagatagattctacc 7999686  T
Q  131 ttgg 134  Q
    ||||    
T  7999687 ttgg 7999690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 6e-38; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 26159328 - 26159193
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagaga 98  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| || || | |||||||||  ||| || |||||||||||| ||||||    
T  26159328 gtttaagtggtggtgagatgcgccaaagtgtttcgtggagcggatggggggtgtgtatctgcaggcactccgacgctcaagtaagtagagatcagagaga 26159229  T
Q  99 gtgaaggtttagaggaagagatagattctacattgg 134  Q
    |||| |||||||||||||||||||||||||| ||||    
T  26159228 gtgagggtttagaggaagagatagattctaccttgg 26159193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 41266491 - 41266355
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagaga 98  Q
    |||| |||||||||||||||||||||| || || ||||||||||||||||| || ||||| | |||||||||  ||| || |||||||||||| ||||||    
T  41266491 gttttagtggtggtgaaatgcgccaaaatgcttattggagcggatggggggggtgtacctgcaggcactccgacgctcaagtaagtagagatcagagaga 41266392  T
Q  99 gtgaagg-tttagaggaagagatagattctacattgg 134  Q
    |||| || |||||||||||||||||||||||| ||||    
T  41266391 gtgagggttttagaggaagagatagattctaccttgg 41266355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 23756114 - 23755978
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatgggggg-tgtttacctactggcactccg--gctaaaataagtagagatcggagag 97  Q
    |||| |||||||||||||| ||||||| || ||||| |||||||||||||| ||| ||||| | ||||||| |  ||| || |||||||||||| |||||    
T  23756114 gttttagtggtggtgaaattcgccaaattgcttcttagagcggatgggggggtgtgtacctgcaggcactctgacgctcaagtaagtagagatcagagag 23756015  T
Q  98 agtgaaggtttagaggaagagatagattctacattgg 134  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  23756014 agtgagggtttagaggaagagatagattctaccttgg 23755978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 3770166 - 3770300
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagaga 98  Q
    |||| |||||||||||||||||||||| || ||||||||||||||||||| |||  |||| |  ||||||||  ||| || |||||||||||| ||||||    
T  3770166 gttttagtggtggtgaaatgcgccaaaatgcttcttggagcggatggggg-tgtgaacctgcaagcactccgacgctcaagtaagtagagatcagagaga 3770264  T
Q  99 gtgaaggtttagaggaagagatagattctacattgg 134  Q
    |||| |||||| ||||||||||||||||||| ||||    
T  3770265 gtgagggtttaaaggaagagatagattctaccttgg 3770300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 129
Target Start/End: Complemental strand, 25134220 - 25134098
Alignment:
Q  7 gtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagagagtgaag 104  Q
    ||||||||| ||||||||||| || |||||||||||||| |||  ||| |||||   ||||||||   ||| || |||||| ||||| |||||| ||| |    
T  25134220 gtggtggtggaatgcgccaaa-tgcttcttggagcggataggga-tgtgtacctgtaggcactccaacgctcaagtaagtatagatcagagagaatgatg 25134123  T
Q  105 gtttagaggaagagatagattctac 129  Q
    |||||||||||||||||||||||||    
T  25134122 gtttagaggaagagatagattctac 25134098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 134
Target Start/End: Original strand, 23929736 - 23929837
Alignment:
Q  32 ttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagagagtgaaggtttagaggaagagatagattctac 129  Q
    ||||||||||||||||||| ||| ||||| | ||||||| |  ||| || ||||||||||||  ||||||||| ||||||||||||||| |||||| |||    
T  23929736 ttcttggagcggatggggg-tgtgtacctgcaggcactctgacgctcaagtaagtagagatc--agagagtgagggtttagaggaagagttagattttac 23929832  T
Q  130 attgg 134  Q
     ||||    
T  23929833 cttgg 23929837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 27347109 - 27347196
Alignment:
Q  32 ttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagagagtgaaggtttagaggaagaga 119  Q
    |||||||||||||||||| |||| ||||||  |||||||||  ||| || | ||||||||||  ||||||||| ||||| ||||||||||    
T  27347109 ttcttggagcggatggggtgtgtgtacctataggcactccgacgctcaagtcagtagagatc--agagagtgatggttttgaggaagaga 27347196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 29568222 - 29568349
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagaga 98  Q
    ||||| ||||||||  |||||| || | || ||||||||| | ||| ||||||| ||||| | | |||||||  ||| || |||||||||||   |||||    
T  29568222 gtttaggtggtggtagaatgcgtcagaatgcttcttggagtgaatgaggggtgtgtacctgcagacactccgatgctcaagtaagtagagatt--agaga 29568319  T
Q  99 gtgaaggtttagaggaagagatagattcta 128  Q
    |||| |||||||||||||| ||||||||||    
T  29568320 gtgagggtttagaggaagacatagattcta 29568349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 47710 - 47575
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagaga 98  Q
    |||| |||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||| |||| ||||  ||| || |||||||||||| ||||||    
T  47710 gtttgagtggtggtgaaatgcgccaaaatgcttcttggagcgaatggggggtgtgtacctacaggcattccgacgctcaagtaagtagagatcagagaga 47611  T
Q  99 gtgaaggtttagaggaagagatagattctacattgg 134  Q
    |||| |||||||||||||||||||||||||| ||||    
T  47610 gtgagggtttagaggaagagatagattctaccttgg 47575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 22705517 - 22705646
Alignment:
Q  8 tggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccggc--taaaataagtagagatcggagagagtgaagg 105  Q
    |||||||||||||||||||| || ||||| ||||||||||||||||| ||||| | ||||||||| |  | || |||||||||||| |||||||||| ||    
T  22705517 tggtggtgaaatgcgccaaaatgcttctttgagcggatggggggtgtgtacctgcaggcactccgacactcaagtaagtagagatcagagagagtgaggg 22705616  T
Q  106 tttagaggaagagatagattctacattggt 135  Q
    |||||||||||||||||||||||| |||||    
T  22705617 tttagaggaagagatagattctaccttggt 22705646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 22703806 - 22703936
Alignment:
Q  6 agtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagagagtgaa 103  Q
    |||||||||||||||||||||| || |||||||||||||| |||||||| ||||| | |||||||||  ||| || |||||||||||  ||||||||||     
T  22703806 agtggtggtgaaatgcgccaaaatgcttcttggagcggattgggggtgtgtacctgcaggcactccgacgctcaagtaagtagagataagagagagtgag 22703905  T
Q  104 ggtttagaggaagagatagattctacattgg 134  Q
    ||||||||||| |||||||||||||| ||||    
T  22703906 ggtttagaggacgagatagattctaccttgg 22703936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 9549263 - 9549128
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagaga 98  Q
    ||||||||||||||| |||| | |||  || ||||||||||||||||||||||| ||||||  |||||||||  ||| || |||||||||||| ||||||    
T  9549263 gtttaagtggtggtggaatgtgtcaatatgcttcttggagcggatggggggtgtgtacctataggcactccgacgctcaagtaagtagagatcagagaga 9549164  T
Q  99 gtgaaggtttagaggaagagatagattctacattgg 134  Q
    |||| |||||||||||||||||||||| ||| ||||    
T  9549163 gtgagggtttagaggaagagatagattttaccttgg 9549128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 21802356 - 21802490
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagaga 98  Q
    |||| |||||||||||||||||||||| || ||||||||||||||||||| ||| ||||||  || ||| ||  ||| || |||||||||||| ||||||    
T  21802356 gttttagtggtggtgaaatgcgccaaaatgcttcttggagcggatggggg-tgtgtacctataggaacttcgacgctcaagtaagtagagatcagagaga 21802454  T
Q  99 gtgaaggtttagaggaagagatagattctacattgg 134  Q
    |||| |||||||||||||||||||||||||| ||||    
T  21802455 gtgagggtttagaggaagagatagattctaccttgg 21802490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 30770478 - 30770346
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagaga 98  Q
    |||| |||||||||||||||||||||| || ||||||||||||||| ||||||| ||||||| |||||||||  ||| || |||||||||||   | |||    
T  30770478 gttttagtggtggtgaaatgcgccaaaatgcttcttggagcggatg-ggggtgtgtacctacaggcactccgacgctcaagtaagtagagat--aaaaga 30770382  T
Q  99 gtgaaggtttagaggaagagatagattctacattgg 134  Q
    |||| |||||||||||||||||||||||||| ||||    
T  30770381 gtgagggtttagaggaagagatagattctaccttgg 30770346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 29164764 - 29164889
Alignment:
Q  9 ggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagagagtgaaggt 106  Q
    ||||||||||||||||||| || ||||||||||||||||||| ||| ||||| | |  ||||||  ||| || ||||||||||||  ||||||||| |||    
T  29164764 ggtggtgaaatgcgccaaaatgcttcttggagcggatgggggctgtgtacctgcagagactccgacgctcaagtaagtagagatc--agagagtgagggt 29164861  T
Q  107 ttagaggaagagatagattctacattgg 134  Q
    ||||||||||||||||||||||| ||||    
T  29164862 ttagaggaagagatagattctaccttgg 29164889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 2250202 - 2250151
Alignment:
Q  82 agtagagatcggagagagtga-aggtttagaggaagagatagattctacattgg 134  Q
    ||||||||||  ||||||||| || |||||||||||||||||||||||||||||    
T  2250202 agtagagatc--agagagtgagagttttagaggaagagatagattctacattgg 2250151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 19967712 - 19967583
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagaga 98  Q
    |||| ||||||||||||||| ||||||||| |||||||||||||||||||| || ||||| | |||||||||  ||| || |||||||||||| ||||||    
T  19967712 gtttgagtggtggtgaaatgtgccaaagtgcttcttggagcggatgggggg-gtgtacctgcaggcactccgacgctcaagtaagtagagatcagagaga 19967614  T
Q  99 gtgaaggtttagaggaagagatagattctac 129  Q
    |||| ||||||||||||||||| ||||||||    
T  19967613 gtgagggtttagaggaagagatggattctac 19967583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 19442397 - 19442270
Alignment:
Q  9 ggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccggc--taaaataagtagagatcggagagagtgaaggt 106  Q
    ||||||||||||||||||| || |||||||||||||||| |||||| ||||| | ||||||| | |  | || |||||||||||| |||||||||| |||    
T  19442397 ggtggtgaaatgcgccaaaatgcttcttggagcggatggagggtgtgtacctgcaggcactctgacactcaagtaagtagagatcagagagagtgagggt 19442298  T
Q  107 ttagaggaagagatagattctacattgg 134  Q
    ||||||||||||||||||||||| ||||    
T  19442297 ttagaggaagagatagattctaccttgg 19442270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 8991021 - 8990926
Alignment:
Q  32 ttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagagagtgaaggtttagaggaagagatagattctac 129  Q
    ||||||||||| |||||| ||||  |||| | || ||||||  ||| |||| ||||||||||  ||||||||| ||||||||||||||| ||||||||||    
T  8991021 ttcttggagcgaatggggtgtgt--acctgcaggtactccgacgctcaaatcagtagagatc--agagagtgagggtttagaggaagagttagattctac 8990926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0989 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 1808 - 1681
Alignment:
Q  9 ggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccggc--taaaataagtagagatcggagagagtgaaggt 106  Q
    ||||||||||||||||||| || | ||||||||||||||||||||| || || | ||||||||| |  | || |||||||||||| |||||||||| |||    
T  1808 ggtggtgaaatgcgccaaaatgctacttggagcggatggggggtgtgtatctgcaggcactccgacgttcaagtaagtagagatcagagagagtgagggt 1709  T
Q  107 ttagaggaagagatagattctacattgg 134  Q
    ||||||||||||||||||||||| ||||    
T  1708 ttagaggaagagatagattctaccttgg 1681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 12885186 - 12885320
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagaga 98  Q
    |||| |||||||||||||||||||||| |  ||||||||||||||||||| ||| ||||| | |||||||||  ||| || |||||||||||| |||||     
T  12885186 gttttagtggtggtgaaatgcgccaaaatacttcttggagcggatggggg-tgtgtacctgcaggcactccgacgctcaagtaagtagagatcagagagg 12885284  T
Q  99 gtgaaggtttagaggaagagatagattctacattgg 134  Q
    |||| |||||||||||||||||||||||||| ||||    
T  12885285 gtgagggtttagaggaagagatagattctaccttgg 12885320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 10986002 - 10985872
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagaga 98  Q
    |||| |||||||||||||| |||||||||||||||||||||||||| ||||| | ||||| |  |||||| |  |||     ||||||||||| ||||||    
T  10986002 gtttgagtggtggtgaaatacgccaaagtgtttcttggagcggatg-ggggtatgtacctgcaagcactctgacgct----caagtagagatcagagaga 10985908  T
Q  99 gtgaaggtttagaggaagagatagattctacattgg 134  Q
    |||| ||||| ||||||||| |||||||||| ||||    
T  10985907 gtgagggtttggaggaagaggtagattctaccttgg 10985872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 3270452 - 3270586
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagaga 98  Q
    |||| |||||||||  |||||||||||  | || ||||| |||||||||||||| ||||| | |||||||||  ||| || | || ||||||| ||||||    
T  3270452 gtttgagtggtggtagaatgcgccaaac-gcttgttggaacggatggggggtgtgtacctgcaggcactccgacgctcaagtcagcagagatcagagaga 3270550  T
Q  99 gtgaaggtttagaggaagagatagattctacattgg 134  Q
    |||| |||||||||| |||||||||| |||| ||||    
T  3270551 gtgagggtttagagggagagatagatcctaccttgg 3270586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10271546 - 10271599
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgt 54  Q
    |||| |||||||||||||||| ||||| || |||||||||||||||||||||||    
T  10271546 gttttagtggtggtgaaatgcaccaaaatgcttcttggagcggatggggggtgt 10271599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 3268322 - 3268374
Alignment:
Q  82 agtagagatcggagagagtgaaggtttagaggaagagatagattctacattgg 134  Q
    |||||||||| |||||||||| |||||||||| ||||||||||||||| ||||    
T  3268322 agtagagatcagagagagtgagggtttagagggagagatagattctaccttgg 3268374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 21332757 - 21332704
Alignment:
Q  80 taagtagagatcggagagagtgaaggtttagaggaagagatagattctacattgg 134  Q
    |||||||||||| |||||||||| ||||| |||||||||||||||||||| ||||    
T  21332757 taagtagagatcagagagagtgagggttt-gaggaagagatagattctaccttgg 21332704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 6 - 129
Target Start/End: Original strand, 8244421 - 8244546
Alignment:
Q  6 agtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagagagtgaa 103  Q
    |||||||||||||||||||||| || ||||||||||||||||||| ||| ||||| | |||||||||   || || |||||| ||||| ||||||||||     
T  8244421 agtggtggtgaaatgcgccaaaatgcttcttggagcggatgggggatgtgtacctgcaggcactccgacactcaagtaagtatagatcagagagagtgag 8244520  T
Q  104 ggtttagaggaagagatagattctac 129  Q
    ||||| ||||||||||||||||||||    
T  8244521 ggttttgaggaagagatagattctac 8244546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 22922333 - 22922201
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagaga 98  Q
    ||||||||||||||  |||| | || | || |||||||||||||||| |||||| ||||| | |||||||||  ||| || | ||||||||||  |||||    
T  22922333 gtttaagtggtggtagaatgtgtcagaatgcttcttggagcggatggagggtgtgtacctgcaggcactccgacgctcaagt-agtagagatc--agaga 22922237  T
Q  99 gtgaaggtttagaggaagagatagattctacattgg 134  Q
    |||| |||||||||||||||||||||||||| ||||    
T  22922236 gtgagggtttagaggaagagatagattctaccttgg 22922201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 23495284 - 23495388
Alignment:
Q  29 tgtttcttggagcggatggggggtgtttacctactggcactcc--ggctaaaataagtagagatcggagagagtgaagg-tttagaggaagagatagatt 125  Q
    |||||||||||||||||||||||||| ||||| | ||||||||   ||| || | ||||||||||  |||||||||||| |||||||||||||  |||||    
T  23495284 tgtttcttggagcggatggggggtgtgtacctgcaggcactccaacgctcaagtcagtagagatc--agagagtgaaggttttagaggaagag--agatt 23495379  T
Q  126 ctacattgg 134  Q
    |||||||||    
T  23495380 ctacattgg 23495388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 19330104 - 19330052
Alignment:
Q  80 taagtagagatcggagagagtgaaggtttagaggaagagatagattctacattgg 134  Q
    ||||||||||||  ||||||||| |||||||||||||||||||||||||| ||||    
T  19330104 taagtagagatc--agagagtgagggtttagaggaagagatagattctaccttgg 19330052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 5931178 - 5931224
Alignment:
Q  82 agtagagatcggagagagtgaaggtttagaggaagagatagattcta 128  Q
    |||||||||| |||||||||| |||||||||| ||||||||||||||    
T  5931178 agtagagatcagagagagtgagggtttagagggagagatagattcta 5931224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 22922848 - 22922798
Alignment:
Q  82 agtagagatcggagagagtgaaggtttagaggaagagatagattctacattgg 134  Q
    ||||||||||  ||||||||| |||||||||||||||||||||||||| ||||    
T  22922848 agtagagatc--agagagtgagggtttagaggaagagatagattctaccttgg 22922798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 41037866 - 41037814
Alignment:
Q  80 taagtagagatcggagagagtgaaggtttagaggaagagatagattctacattgg 134  Q
    ||||||||||||  ||||||||| |||||||||||||||||| ||||||| ||||    
T  41037866 taagtagagatc--agagagtgagggtttagaggaagagatatattctaccttgg 41037814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 28068234 - 28068188
Alignment:
Q  81 aagtagagatcggagagagtgaaggtttagaggaagagatagattctac 129  Q
    |||||||||||  ||||||||| |||||||||||||||| |||||||||    
T  28068234 aagtagagatc--agagagtgagggtttagaggaagagagagattctac 28068188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 22914962 - 22915092
Alignment:
Q  4 taagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagagagtg 101  Q
    |||||||||||||||||||||||| || ||||||||| |||||||| | || ||| | | |||||||||  ||| || ||||||||||||  ||||||||    
T  22914962 taagtggtggtgaaatgcgccaaaatgcttcttggagtggatggggtgcgtgtacttgcaggcactccgacgctcaagtaagtagagatc--agagagtg 22915059  T
Q  102 aaggtttagaggaagagatagattctacattgg 134  Q
    | |||||||||||||||||||||||||| ||||    
T  22915060 agggtttagaggaagagatagattctaccttgg 22915092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 1997913 - 1998046
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagaga 98  Q
    |||| |||||||||||||| ||||||| || |  ||||||||||||||| ||||  |||| | |||||||    ||| || |||||||||||| ||||||    
T  1997913 gtttgagtggtggtgaaatacgccaaaatgctatttggagcggatggggtgtgt--acctgcaggcactctaatgctcaagtaagtagagatcagagaga 1998010  T
Q  99 gtgaaggtttagaggaagagatagattctacattgg 134  Q
    |||| |||||||||  ||||| ||||||||| ||||    
T  1998011 gtgagggtttagagacagagacagattctaccttgg 1998046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 30346 - 30222
Alignment:
Q  6 agtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagagagtgaa 103  Q
    |||||||||||||||||||||| || ||||||||||||||| ||||||| ||||| | | ||| | |  ||| || |||||||| ||| | ||||||||     
T  30346 agtggtggtgaaatgcgccaaaatgcttcttggagcggatg-ggggtgtgtacctgcagacacgctgacgctcaagtaagtagatatcagtgagagtgag 30248  T
Q  104 ggtttagaggaagagatagattctac 129  Q
    | ||||||||||||||||||||||||    
T  30247 gatttagaggaagagatagattctac 30222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 4489 - 4363
Alignment:
Q  1 gtttaagtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagaga 98  Q
    ||||| ||||||||| ||| || || | || ||||||||||||||||||||||| ||||| | ||||||  |  ||| || ||||||||||||  |||||    
T  4489 gtttatgtggtggtggaatacgtcagaatgcttcttggagcggatggggggtgtgtaccttcaggcactttgacgctcaagtaagtagagatc--agaga 4392  T
Q  99 gtgaaggtttagaggaagagatagattct 127  Q
    |||| ||||||||||||||||||||||||    
T  4391 gtgagggtttagaggaagagatagattct 4363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 1302 - 1200
Alignment:
Q  32 ttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagagagtgaaggtttagaggaagagatagattctac 129  Q
    ||||||||| ||||||||||||| ||||| | |||||||||  ||| || | ||||||||||  || |||||| ||||||||||||||||||||||||||    
T  1302 ttcttggagtggatggggggtgtgtacctgcaggcactccgacgctcaagtcagtagagatc--agtgagtgagggtttagaggaagagatagattctac 1205  T
Q  130 attgg 134  Q
     ||||    
T  1204 gttgg 1200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 1560 - 1648
Alignment:
Q  47 gggggtgtttacctactggcactccg--gctaaaataagtagagatcggagagagtgaaggtttagaggaagagatagattctacattgg 134  Q
    |||||||| ||||| | |||||||||  ||| || |||||||||||| | |||||||| |||||||||||||||||||||||||||||||    
T  1560 gggggtgtgtacctgcaggcactccgacgctcaagtaagtagagatcag-gagagtgagggtttagaggaagagatagattctacattgg 1648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 129
Target Start/End: Original strand, 15303 - 15400
Alignment:
Q  32 ttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagagagtgaaggtttagaggaagagatagattctac 129  Q
    ||||||||||||||||||||||| ||| |   ||||| |||  ||| || ||||||||||||  ||||||||| ||||||||||||||||||||||||||    
T  15303 ttcttggagcggatggggggtgtgtacatgaaggcacgccgacgctcaagtaagtagagatc--agagagtgagggtttagaggaagagatagattctac 15400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 134
Target Start/End: Original strand, 253251 - 253353
Alignment:
Q  32 ttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagagagtgaaggtttagaggaagagatagattctac 129  Q
    |||||||| |||||||||||||| ||||| | | |||||||  ||| || ||||||||||||  ||||||||| ||||||||||||||| ||||||||||    
T  253251 ttcttggaacggatggggggtgtgtacctgcagacactccgacgctcaagtaagtagagatc--agagagtgacggtttagaggaagagttagattctac 253348  T
Q  130 attgg 134  Q
     ||||    
T  253349 cttgg 253353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 242611 - 242707
Alignment:
Q  32 ttcttggagcggatggggggtgtttacctactggcactccggc--taaaataagtagagatcggagagagtgaaggtttagaggaagagatagattcta 128  Q
    |||||||| |||||||||||||| |||||   |||||||||||  | || ||||||| |||   ||||||||| | ||||||||||||| |||||||||    
T  242611 ttcttggaacggatggggggtgtgtacctgtaggcactccggcgctcaagtaagtagcgatt--agagagtgaggatttagaggaagagttagattcta 242707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 19061 - 19190
Alignment:
Q  6 agtggtggtgaaatgcgccaaagtgtttcttggagcggatggggggtgtttacctactggcactccg--gctaaaataagtagagatcggagagagtgaa 103  Q
    |||||||||||||||| ||||| || ||||||||| ||||||||| | | ||||| | | ||||  |  ||| || |||||||| ||| ||||||||||     
T  19061 agtggtggtgaaatgcaccaaaatgcttcttggagtggatggggg-tatgtacctgcagacactatgacgctcaagtaagtagatatcagagagagtgag 19159  T
Q  104 ggtttagaggaagagatagattctacattgg 134  Q
    | |||||||||||||||||||||||| ||||    
T  19160 gatttagaggaagagatagattctaccttgg 19190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 391459 - 391499
Alignment:
Q  94 agagagtgaaggtttagaggaagagatagattctacattgg 134  Q
    ||||||||| |||||||||||||||||||||||||| ||||    
T  391459 agagagtgagggtttagaggaagagatagattctaccttgg 391499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 74845 - 74885
Alignment:
Q  94 agagagtgaaggtttagaggaagagatagattctacattgg 134  Q
    ||||||||| ||| |||||||||||||||||||||| ||||    
T  74845 agagagtgatggtatagaggaagagatagattctaccttgg 74885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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