View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10337_low_10 (Length: 341)
Name: NF10337_low_10
Description: NF10337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10337_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 3312372 - 3312694
Alignment:
| Q |
1 |
agatagaaatttatgttatcactcttgataggattgccataattccctcattccattcagttttttgtgttggccacaaattcacgttgtgacaaattta |
100 |
Q |
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| T |
3312372 |
agatagaaatttatgttatcactcttgatggaattgccataattccctcattccattcagttttttgtgttggccacaaattcacgttgtgacaaattta |
3312471 |
T |
|
| Q |
101 |
cgaagataaactatatatgtaaaacacatcttcacttttggattactataaaaccagtgaactttgtgcatgtgcgattgatgacttattgattttacat |
200 |
Q |
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| T |
3312472 |
cgaagataaactatatatgtaaaacacatcttcacttttggattactataaaaccagtgaactttgtgcatgtgcgattgatggcttattgattttacat |
3312571 |
T |
|
| Q |
201 |
caaaagatgagattgataaggatactctcttagatcttataataaagaggaccgtgaacttctacttttaaagatccatgttagttatcattagaatttt |
300 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3312572 |
caaaagatgagattgatagggacactctcttagatcttataataaagagaaccgcgaacttctacttttaaagatccatgttagttatcgttagaatttt |
3312671 |
T |
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| Q |
301 |
aaatgattttcaagtattgatcc |
323 |
Q |
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| T |
3312672 |
aaatgattttcaagtattgatcc |
3312694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 157 - 322
Target Start/End: Original strand, 3319639 - 3319804
Alignment:
| Q |
157 |
gtgaactttgtgcatgtgcgattgatgacttattgattttacatcaaaagatgagattgataaggatactctcttagatcttataataaagaggaccgtg |
256 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||| |||||||||||| |||| |||||||||||||||||||||||| || | | ||| |
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| T |
3319639 |
gtgaactttgtgcaagtgcgattgatgatttattgattttacaccaaaagatgagaccgatagggatactctcttagatcttataattaaaaaaatcgta |
3319738 |
T |
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| Q |
257 |
aacttctacttttaaagatccatgttagttatcattagaattttaaatgattttcaagtattgatc |
322 |
Q |
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| T |
3319739 |
aacttctacttctaaagatccatgttagttatcgttataattttaaatggttttcaagtatagatc |
3319804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 3319490 - 3319559
Alignment:
| Q |
28 |
ataggattgccataattccctcattccattcagtt--ttttgtgttggccacaaattcacgttgtgacaa |
95 |
Q |
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|||||||||||| |||| |||||||||||| | || |||||| ||||||||||||||| |||||||||| |
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| T |
3319490 |
ataggattgccagaatttcctcattccatttatttatttttgtattggccacaaattcaagttgtgacaa |
3319559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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