View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10337_low_11 (Length: 318)

Name: NF10337_low_11
Description: NF10337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10337_low_11
NF10337_low_11
[»] chr6 (12 HSPs)
chr6 (1-303)||(6585299-6585601)
chr6 (1-123)||(6603264-6603386)
chr6 (1-121)||(6402777-6402897)
chr6 (1-123)||(6432076-6432198)
chr6 (1-121)||(7119074-7119194)
chr6 (1-121)||(7131552-7131672)
chr6 (13-119)||(19632358-19632464)
chr6 (3-117)||(10579800-10579915)
chr6 (3-121)||(6423134-6423252)
chr6 (2-119)||(7994245-7994362)
chr6 (3-131)||(6415873-6416001)
chr6 (1-66)||(6586172-6586237)
[»] chr3 (4 HSPs)
chr3 (1-117)||(51113843-51113959)
chr3 (3-126)||(51764504-51764627)
chr3 (3-131)||(13470796-13470924)
chr3 (12-121)||(514801-514910)
[»] chr2 (2 HSPs)
chr2 (1-117)||(45245147-45245263)
chr2 (1-117)||(1037726-1037842)
[»] chr4 (9 HSPs)
chr4 (1-117)||(546834-546950)
chr4 (6-119)||(8184097-8184210)
chr4 (1-94)||(1548486-1548579)
chr4 (1-121)||(1513469-1513586)
chr4 (12-116)||(370842-370946)
chr4 (13-117)||(53761844-53761947)
chr4 (225-268)||(51169285-51169328)
chr4 (69-121)||(21834436-21834488)
chr4 (1-117)||(55908790-55908906)
[»] chr1 (2 HSPs)
chr1 (1-104)||(7554422-7554525)
chr1 (1-131)||(19468561-19468691)
[»] chr5 (1 HSPs)
chr5 (13-136)||(20478156-20478279)
[»] chr7 (3 HSPs)
chr7 (3-121)||(15092215-15092333)
chr7 (3-120)||(10170145-10170262)
chr7 (3-120)||(10177670-10177787)
[»] scaffold0807 (1 HSPs)
scaffold0807 (1-49)||(1529-1577)
[»] chr8 (1 HSPs)
chr8 (1-48)||(32151291-32151338)


Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 6585299 - 6585601
Alignment:
Q  1 tgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6585299 tgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacagagaagggactgaaacatgtggta 6585398  T
Q  101 gaaatttgcacacaactgagaaaacatggatgccttctgtatatgtaaattgagtatgtcttgtacttaagagtgtgtattgactctcttttcagtcctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6585399 gaaatttgcacacaactgagaaaacatggatgccttctgtatatgtaaattgagtatgtcttgtacttaagagtgagtattgactctcttttcagtcctt 6585498  T
Q  201 atataaatatctaaattacacatgtattcatgaaaacagtgaaggacttgatgctggaagttcagacggtaatcaccagaagagagattctactcaagta 300  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6585499 atataaatatctaaattacacatgtattcatgaaaacggtgaaggacttgatgctggaagttcagacggtaatcaccagaagagagattctactcaagta 6585598  T
Q  301 tct 303  Q
    |||    
T  6585599 tct 6585601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 6603264 - 6603386
Alignment:
Q  1 tgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggta 100  Q
    ||||||| |||||| |||||||||||||||| ||| |||||||||||||||| |||||  |||| |  |||||||| |||| ||| ||||||||||||||    
T  6603264 tgaaacagtctatgcgatctcaaagagttgtcctgggcttttggaactattattgaaatattgttattatgtcacagagaaaggagtgaaacatgtggta 6603363  T
Q  101 gaaatttgcacacaactgagaaa 123  Q
    ||||  |||| ||||||||||||    
T  6603364 gaaaactgcaaacaactgagaaa 6603386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 6402897 - 6402777
Alignment:
Q  1 tgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggta 100  Q
    |||||||||||||||||||||||||| ||||  || ||||||| |||||||| ||| || |||| | ||||||||| | ||||||  |||||||||| ||    
T  6402897 tgaaacactctatgtgatctcaaagaattgtagtgggcttttgaaactattattgagagattgttataatgtcacagaaaagggagcgaaacatgtgata 6402798  T
Q  101 gaaatttgcacacaactgaga 121  Q
    ||||  || ||||||||||||    
T  6402797 gaaaactgtacacaactgaga 6402777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 6432198 - 6432076
Alignment:
Q  1 tgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggta 100  Q
    ||||||||| |||||||||| ||||| ||||| || |||| || ||||||| ||| |   |||||| ||||||||| |||||||| |||||| |||||||    
T  6432198 tgaaacactttatgtgatcttaaagaattgttgtgggcttctgcaactattcctgtacaattgtgataatgtcacacagaagggagtgaaacttgtggta 6432099  T
Q  101 gaaatttgcacacaactgagaaa 123  Q
    ||||  ||||||||| |||||||    
T  6432098 gaaaaatgcacacaattgagaaa 6432076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 7119194 - 7119074
Alignment:
Q  1 tgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggta 100  Q
    |||||||||| |||||||||| |||| |||||  | ||||||||||||||||||||||| |||| |  |||||||| | || | | |||||||||||| |    
T  7119194 tgaaacactccatgtgatctcgaagaattgttgcgggcttttggaactattactgaaagattgttattatgtcacaaaaaaagaagtgaaacatgtggaa 7119095  T
Q  101 gaaatttgcacacaactgaga 121  Q
    ||||  ||||||||| |||||    
T  7119094 gaaaactgcacacaattgaga 7119074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 7131672 - 7131552
Alignment:
Q  1 tgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggta 100  Q
    |||||||||| |||||||||| |||| |||||  | ||||||||||||||||||||||| |||| |  |||||||| | || | | |||||||||||| |    
T  7131672 tgaaacactccatgtgatctcgaagaattgttgcgggcttttggaactattactgaaagattgttattatgtcacaaacaaagcagtgaaacatgtggaa 7131573  T
Q  101 gaaatttgcacacaactgaga 121  Q
    ||||  ||||||||| |||||    
T  7131572 gaaaactgcacacaattgaga 7131552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 19632464 - 19632358
Alignment:
Q  13 tgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggtagaaatttgcaca 112  Q
    |||||||||||||| ||||| || ||||||| |||| |||||||||  |||||  ||| ||||| |||||||| ||||||| ||||||||||  |||| |    
T  19632464 tgtgatctcaaagaattgttgtgggcttttgcaactcttactgaaaaattgtgctaatatcacagagaagggagtgaaacacgtggtagaaaactgcaaa 19632365  T
Q  113 caactga 119  Q
    |||||||    
T  19632364 caactga 19632358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 10579800 - 10579915
Alignment:
Q  3 aaacactctatgtgatctcaaagagttgttctgcgcttttggaactatt-actgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggtag 101  Q
    |||||||||||  ||||||||||| ||||| |  ||||||||||||||| |||||||   ||| |||  |||||| |||||||| | |||||||||||||    
T  10579800 aaacactctattcgatctcaaagaattgttgtcggcttttggaactatttactgaaaaactgtaaaagggtcacaaagaagggagttaaacatgtggtag 10579899  T
Q  102 aaatttgcacacaact 117  Q
    |||  |||||||||||    
T  10579900 aaaactgcacacaact 10579915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 6423252 - 6423134
Alignment:
Q  3 aaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggtaga 102  Q
    |||||||||||| ||||||||||||||||| || | ||||| ||||||||||  ||| ||||||  |||| ||| | || |||||||||| |||||||      
T  6423252 aaacactctatgcgatctcaaagagttgttgtgggattttgcaactattacttgaagattgtgattatgtaacaaacaaaggactgaaacgtgtggtatt 6423153  T
Q  103 aatttgcacacaactgaga 121  Q
    ||  ||||||||| |||||    
T  6423152 aaactgcacacaattgaga 6423134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 119
Target Start/End: Original strand, 7994245 - 7994362
Alignment:
Q  2 gaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggtag 101  Q
    |||||||| |||||||||||||||| ||||||||  |||||| ||||||||||  ||  |||| |  |||| ||  || ||||| |||||||||||||||    
T  7994245 gaaacactatatgtgatctcaaagaattgttctggacttttgcaactattacttgaactttgtaatgatgttaccgaggagggagtgaaacatgtggtag 7994344  T
Q  102 aaatttgcacacaactga 119  Q
    |||  ||||| |||||||    
T  7994345 aaaactgcacgcaactga 7994362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 6416001 - 6415873
Alignment:
Q  3 aaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggtaga 102  Q
    |||| ||||||||||||||||||| ||||   | ||||||| ||||||||||  ||  |||||| ||||||||| |   |||| ||||||||||||||||    
T  6416001 aaactctctatgtgatctcaaagaattgtagcgggcttttgcaactattacttgaattttgtgataatgtcacagaagtgggagtgaaacatgtggtaga 6415902  T
Q  103 aatttgcacacaactgagaaaacatggat 131  Q
     |  ||||||||||| ||| | |||||||    
T  6415901 gaactgcacacaactaagagagcatggat 6415873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 6586172 - 6586237
Alignment:
Q  1 tgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtga 66  Q
    ||||||||||| || ||||||||||| |||| ||  |||||||||||||| ||||| |||||||||    
T  6586172 tgaaacactctgtgcgatctcaaagatttgtcctaggcttttggaactatcactgataggttgtga 6586237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 51113843 - 51113959
Alignment:
Q  1 tgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggta 100  Q
    ||||||||||||||||||||| |||||||||| || ||||||| |||| |||||||||  |||| |  |||||||| |||||||| |||| |||||||||    
T  51113843 tgaaacactctatgtgatctcgaagagttgttgtgggcttttgcaactgttactgaaaaattgttaccatgtcacagagaagggagtgaagcatgtggta 51113942  T
Q  101 gaaatttgcacacaact 117  Q
    ||||  |||||| ||||    
T  51113943 gaaaaatgcacaaaact 51113959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 126
Target Start/End: Original strand, 51764504 - 51764627
Alignment:
Q  3 aaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggtaga 102  Q
    |||||||||||| ||||||||||| |||||  | ||||||| ||||||||||| ||  |||||| |||||||   |||||||| ||||||||||||| ||    
T  51764504 aaacactctatgcgatctcaaagaattgttgcgggcttttgcaactattactggaacattgtgataatgtcaaggagaagggagtgaaacatgtggttga 51764603  T
Q  103 aatttgcacacaactgagaaaaca 126  Q
    ||  ||||||||| ||||| ||||    
T  51764604 aaactgcacacaattgagagaaca 51764627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 13470796 - 13470924
Alignment:
Q  3 aaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggtaga 102  Q
    ||||||||||| |||||||||||| ||||| || ||||||| ||||||||||  ||  |||| | ||||||||| |  ||||| ||||||||||||||||    
T  13470796 aaacactctatatgatctcaaagaattgttgtgggcttttgcaactattacttgaactttgtcataatgtcacagaagagggagtgaaacatgtggtaga 13470895  T
Q  103 aatttgcacacaactgagaaaacatggat 131  Q
     |  |||||||| || ||| | |||||||    
T  13470896 gaactgcacacagctaagagagcatggat 13470924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 514801 - 514910
Alignment:
Q  12 atgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggtagaaatttgcac 111  Q
    |||||||||| |||||||| | || ||||||| ||||||||||| ||  |||||||  | ||||| ||| |||| |||| ||||||||  |||  |||||    
T  514801 atgtgatctcgaagagttgctgtgggcttttgcaactattactgcaaaattgtgaaggtatcacagagacgggagtgaagcatgtggtgaaaaactgcac 514900  T
Q  112 acaactgaga 121  Q
    || |||||||    
T  514901 acgactgaga 514910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 45245147 - 45245263
Alignment:
Q  1 tgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggta 100  Q
    |||||||||| ||||||||||||||||||||  || ||||||| |||||||| |||||   ||| |  |||||||| | |||||| ||||||||||||||    
T  45245147 tgaaacactccatgtgatctcaaagagttgtcgtgggcttttgcaactattattgaaaaaatgttatcatgtcacagataagggagtgaaacatgtggta 45245246  T
Q  101 gaaatttgcacacaact 117  Q
    |||| ||||||||||||    
T  45245247 gaaaattgcacacaact 45245263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 1037726 - 1037842
Alignment:
Q  1 tgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggta 100  Q
    ||||||||||||| |||||||||||| ||||| || ||||||  |||| || ||| ||  ||||||  | |||||| |||| ||  |||||||||| ||     
T  1037726 tgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgtttctggaaaattgtgatgaagtcacagagaatggtgtgaaacatgtagtc 1037825  T
Q  101 gaaatttgcacacaact 117  Q
    ||||  |||||||||||    
T  1037826 gaaaactgcacacaact 1037842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 546950 - 546834
Alignment:
Q  1 tgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggta 100  Q
    |||||||||||||||||||||||||||||||| || |||||||||| | |||||| |||  |||    |||||||| |||||||| ||||||||||| ||    
T  546950 tgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactggaagaatgttttcatgtcacagagaagggagtgaaacatgtgcta 546851  T
Q  101 gaaatttgcacacaact 117  Q
    ||||  |||||| ||||    
T  546850 gaaaactgcacaaaact 546834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 8184097 - 8184210
Alignment:
Q  6 cactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggtagaaat 105  Q
    |||||||||  |||||||||||||||| || |||||||||||| |||||| ||  ||||||||   ||||| |  ||||| |||| |||||| ||||||     
T  8184097 cactctatgcaatctcaaagagttgttgtgggcttttggaactgttactggaaaattgtgaaatgatcacagatgagggagtgaagcatgtgctagaaaa 8184196  T
Q  106 ttgcacacaactga 119  Q
    ||||||||||||||    
T  8184197 ttgcacacaactga 8184210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 1548486 - 1548579
Alignment:
Q  1 tgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacat 94  Q
    |||||||||| ||||||||||||||||||||| || ||||||| |  | ||||  ||| ||||| ||||| ||||| |||||||| ||||||||    
T  1548486 tgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttacaaaaacgttgtaaaaatatcacagagaagggagtgaaacat 1548579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 1513469 - 1513586
Alignment:
Q  1 tgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggta 100  Q
    |||||||||||| || ||||||||| |||||  || ||||||| ||||  ||||||||||||||   | ||||||| ||| |||| |||| | |||| ||    
T  1513469 tgaaacactctacgtaatctcaaagtgttgtcgtgggcttttgcaactcatactgaaaggttgt---attgtcacagagatgggagtgaagcttgtgcta 1513565  T
Q  101 gaaatttgcacacaactgaga 121  Q
    ||||  |||||||||||||||    
T  1513566 gaaaaatgcacacaactgaga 1513586  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 370946 - 370842
Alignment:
Q  12 atgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggtagaaatttgcac 111  Q
    ||||||||||||||||||||| |  ||||||| ||||||||||| ||  |||||||  | ||||| ||| |||| |||| ||||||||  |||  |||||    
T  370946 atgtgatctcaaagagttgttgtcggcttttgcaactattactgcaaaattgtgaaggtatcacaaagatgggagtgaagcatgtggtgaaaaactgcac 370847  T
Q  112 acaac 116  Q
    |||||    
T  370846 acaac 370842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 53761844 - 53761947
Alignment:
Q  13 tgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggtagaaatttgcaca 112  Q
    ||||||||| |||| ||||  || ||||||| || |||||||||||  |||||| ||||||||  | |||||| |||||||||||| |||||  ||||||    
T  53761844 tgtgatctcgaagaattgtcgtgggcttttgcaa-tattactgaaacattgtgataatgtcacggacaagggagtgaaacatgtggaagaaaactgcaca 53761942  T
Q  113 caact 117  Q
    |||||    
T  53761943 caact 53761947  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 51169328 - 51169285
Alignment:
Q  225 tattcatgaaaacagtgaaggacttgatgctggaagttcagacg 268  Q
    |||||||| |||||||  ||||||||||||||||||||||||||    
T  51169328 tattcatgcaaacagtagaggacttgatgctggaagttcagacg 51169285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 21834436 - 21834488
Alignment:
Q  69 atgtcacatagaagggactgaaacatgtggtagaaatttgcacacaactgaga 121  Q
    |||||||| |||||||| |||||||| |||||||||  || ||||||||||||    
T  21834436 atgtcacagagaagggaatgaaacatatggtagaaagatgtacacaactgaga 21834488  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 55908790 - 55908906
Alignment:
Q  1 tgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggta 100  Q
    ||||||||||||| |||||||||||| ||||| || ||||||  |||| || ||| ||  ||||||  | |||||| |||| ||  |||||||||| ||     
T  55908790 tgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgtttctggaaaattgtgatgaagtcacagagaatggtgtgaaacatgtagtc 55908889  T
Q  101 gaaatttgcacacaact 117  Q
    ||||  |||||||||||    
T  55908890 gaaaactgcacacaact 55908906  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 7554525 - 7554422
Alignment:
Q  1 tgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggta 100  Q
    |||| |||||||| |||||||||||||||||  ||  |||||  |||| ||||||||||| ||||| ||||||||| | |||||| |||| |||||||||    
T  7554525 tgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttactgaaaggatgtgataatgtcacagaaaagggagtgaagcatgtggta 7554426  T
Q  101 gaaa 104  Q
    ||||    
T  7554425 gaaa 7554422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 19468561 - 19468691
Alignment:
Q  1 tgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggta 100  Q
    ||||||||| ||||||||||||||||  |||| ||  ||||||||| ||||  || | |||||| |  |||||||| |||| ||| |||||||||||  |    
T  19468561 tgaaacactttatgtgatctcaaagaactgttgtggacttttggaattatttgtggacggttgtaatgatgtcacagagaaaggagtgaaacatgtgaaa 19468660  T
Q  101 gaaatttgcacacaactgagaaaacatggat 131  Q
    |||| |||| ||||||||||| |||||||||    
T  19468661 gaaaattgctcacaactgagagaacatggat 19468691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 20478156 - 20478279
Alignment:
Q  13 tgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggtagaaatttgcaca 112  Q
    ||||||||||| || ||||| || ||||||| || || ||||||||  ||| || |||||||||  ||| |||  ||||||||| |||||||  ||||||    
T  20478156 tgtgatctcaaggaattgttgtgggcttttgcaaatactactgaaaaattgcgataatgtcacaatgaaaggagcgaaacatgtcgtagaaaactgcaca 20478255  T
Q  113 caactgagaaaacatggatgcctt 136  Q
    ||||||||| | ||||||||||||    
T  20478256 caactgagagagcatggatgcctt 20478279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 121
Target Start/End: Original strand, 15092215 - 15092333
Alignment:
Q  3 aaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggtaga 102  Q
    |||||||||||| ||||||||||| ||||| || ||||||| ||||||||||  ||  |||| | ||||||||| |   |||| ||||||||||| ||||    
T  15092215 aaacactctatgcgatctcaaagaattgttgtgggcttttgcaactattacttgaattttgttataatgtcacagaagtgggagtgaaacatgtgctaga 15092314  T
Q  103 aatttgcacacaactgaga 121  Q
    ||  ||||||||| |||||    
T  15092315 aaactgcacacaattgaga 15092333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 10170145 - 10170262
Alignment:
Q  3 aaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggtaga 102  Q
    |||||||||||||||||||||||  ||||| ||  |||||| |||||||  ||||   |||| |  |||||||| |||| ||| |||||||||||  |||    
T  10170145 aaacactctatgtgatctcaaagtattgttgtggacttttgaaactatttgtgaacaattgtaatgatgtcacagagaaaggagtgaaacatgtgaaaga 10170244  T
Q  103 aatttgcacacaactgag 120  Q
    ||  ||| ||||||||||    
T  10170245 aaactgctcacaactgag 10170262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 10177670 - 10177787
Alignment:
Q  3 aaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacatagaagggactgaaacatgtggtaga 102  Q
    |||||||||||||||||||||||  ||||| ||  |||||| |||||||  ||||   |||| |  |||||||| |||| ||| |||||||||||  |||    
T  10177670 aaacactctatgtgatctcaaagtattgttgtggacttttgaaactatttgtgaacaattgtaatgatgtcacagagaaaggagtgaaacatgtgaaaga 10177769  T
Q  103 aatttgcacacaactgag 120  Q
    ||  ||| ||||||||||    
T  10177770 aaactgctcacaactgag 10177787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 1529 - 1577
Alignment:
Q  1 tgaaacactctatgtgatctcaaagagttgttctgcgcttttggaacta 49  Q
    |||||||||||||||||||||||||| |||||| | | |||||||||||    
T  1529 tgaaacactctatgtgatctcaaagaattgttcagggattttggaacta 1577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 32151338 - 32151291
Alignment:
Q  1 tgaaacactctatgtgatctcaaagagttgttctgcgcttttggaact 48  Q
    |||||||||||||||||||||||||||||||  || ||||||| ||||    
T  32151338 tgaaacactctatgtgatctcaaagagttgtagtgggcttttgcaact 32151291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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