View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10337_low_12 (Length: 313)
Name: NF10337_low_12
Description: NF10337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10337_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 14609638 - 14609333
Alignment:
| Q |
1 |
aagcgaacaccaataaacaacctgcaaattaatgaaatataggcacaatcagatgcaattataactaaatcgctaagatatacatttaatcctatagtaa |
100 |
Q |
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| T |
14609638 |
aagcgaacaccaataagcaacctgcaaattaatgaaatataggcacaatcagatgcaattataactaaatcgctaagatatacatttaatcctatagtaa |
14609539 |
T |
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| Q |
101 |
ttatttttagttatatacaacatttacatattgcatatataataaccaacctatatggacttatgatgccatttggaactgatctttttcggcacaaagg |
200 |
Q |
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| T |
14609538 |
ttatttttagttatatacaacatttacatattgcatatataataaccaacctatatggacttatgatgccatttggaactgatctttttcggcacaaagg |
14609439 |
T |
|
| Q |
201 |
cttccaaggcttctcagaagaatcaaatactccttgatgcataccatcacctccattttcatcgtctggaggccaatatgcattgccaactccataggta |
300 |
Q |
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| T |
14609438 |
cttccaaggcttctcagaagaatcaaatactccttgatgcataccatcacctccattttcatcgtctggaggccaatatgcattgccaactccataggta |
14609339 |
T |
|
| Q |
301 |
cctttg |
306 |
Q |
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|||||| |
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| T |
14609338 |
cctttg |
14609333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 148 - 306
Target Start/End: Original strand, 14599023 - 14599181
Alignment:
| Q |
148 |
aacctatatggacttatgatgccatttggaactgatctttttcggcacaaaggcttccaaggcttctcagaagaatcaaatactccttgatgcataccat |
247 |
Q |
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|||||||||||| |||||||||||||||||| || | || ||| ||||||||||||||||| ||||| ||| |||||||||||||| || | |||| |
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| T |
14599023 |
aacctatatggagttatgatgccatttggaattggtgttcttctacacaaaggcttccaaggtttctcggaaccatcaaatactccttcatttagaccag |
14599122 |
T |
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| Q |
248 |
cacctccattttcatcgtctggaggccaatatgcattgccaactccataggtacctttg |
306 |
Q |
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| T |
14599123 |
cctcatcatctgaatcatctggaggccaataagcattgccaactccataggtacctttg |
14599181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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