View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10337_low_18 (Length: 269)

Name: NF10337_low_18
Description: NF10337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10337_low_18
NF10337_low_18
[»] chr3 (3 HSPs)
chr3 (83-203)||(7301224-7301344)
chr3 (84-173)||(31106093-31106182)
chr3 (91-162)||(20880404-20880474)
[»] chr8 (2 HSPs)
chr8 (91-165)||(1058146-1058220)
chr8 (91-132)||(10758328-10758369)
[»] chr1 (2 HSPs)
chr1 (91-161)||(27976523-27976593)
chr1 (91-161)||(37473327-37473397)
[»] chr7 (5 HSPs)
chr7 (83-148)||(40252171-40252236)
chr7 (92-165)||(46078071-46078144)
chr7 (84-135)||(20269530-20269581)
chr7 (90-132)||(8960698-8960740)
chr7 (84-121)||(28613599-28613636)
[»] chr5 (2 HSPs)
chr5 (93-148)||(35445996-35446051)
chr5 (93-121)||(37112332-37112360)
[»] chr6 (2 HSPs)
chr6 (92-162)||(24626222-24626292)
chr6 (92-162)||(30536405-30536475)
[»] chr4 (4 HSPs)
chr4 (91-159)||(19494844-19494912)
chr4 (91-161)||(54069489-54069559)
chr4 (91-163)||(17204064-17204136)
chr4 (85-121)||(41336728-41336764)
[»] chr2 (5 HSPs)
chr2 (92-164)||(42868534-42868606)
chr2 (90-162)||(45229439-45229511)
chr2 (91-165)||(42659223-42659297)
chr2 (91-160)||(41812162-41812231)
chr2 (93-161)||(13325498-13325566)


Alignment Details
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 7301344 - 7301224
Alignment:
Q  83 gcttatgacatatacaaaaacaatttaactttgttttattattagctataaaattagcatatgtaaactcatacataagcgctaaacgtgaaaaatgatt 182  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7301344 gcttatgacatataaaaaaacaatttaactttgttttattattagctataaaattagcatatgtaaactcatacataagcgctaaacgtgaaaaatgatt 7301245  T
Q  183 gtaatataacctacaaaaaca 203  Q
    |||||||||||||||||||||    
T  7301244 gtaatataacctacaaaaaca 7301224  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 84 - 173
Target Start/End: Complemental strand, 31106182 - 31106093
Alignment:
Q  84 cttatgacatatacaaaaacaatttaactttgttttattattagctataaaattagcatatgtaaactcatacataagcgctaaacgtga 173  Q
    ||||| ||||||||||||| ||||||||||  || |||||||||||||||||||||| ||||||| ||||||||||||| ||||| ||||    
T  31106182 cttataacatatacaaaaataatttaacttcattatattattagctataaaattagcttatgtaagctcatacataagcactaaatgtga 31106093  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 20880474 - 20880404
Alignment:
Q  91 catatacaaaaacaatttaactttgttttattattagctataaaattagcatatgtaaactcatacataagc 162  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||| |||| ||||||| || ||||||||||    
T  20880474 catatacaaaaacaatttaac-ttgttttatcatttgctataaaaatagcttatgtaagcttatacataagc 20880404  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 1058146 - 1058220
Alignment:
Q  91 catatacaaaaacaatttaactttgttttattattagctataaaattagcatatgtaaactcatacataagcgct 165  Q
    ||||||||||||||  |||||||| |||||| ||| ||||||||| |||| ||||||| || |||||||||||||    
T  1058146 catatacaaaaacagattaactttattttatgatttgctataaaaatagcttatgtaagcttatacataagcgct 1058220  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 10758328 - 10758369
Alignment:
Q  91 catatacaaaaacaatttaactttgttttattattagctata 132  Q
    |||||||||||||||||||||||| |||||| ||| ||||||    
T  10758328 catatacaaaaacaatttaactttattttatgatttgctata 10758369  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 27976593 - 27976523
Alignment:
Q  91 catatacaaaaacaatttaactttgttttattattagctataaaattagcatatgtaaactcatacataag 161  Q
    |||||||||||||||||||||||||||  || ||| ||||||||| |||| ||||||| || |||||||||    
T  27976593 catatacaaaaacaatttaactttgttcaatcatttgctataaaaatagcttatgtaagcttatacataag 27976523  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 37473397 - 37473327
Alignment:
Q  91 catatacaaaaacaatttaactttgttttattattagctataaaattagcatatgtaaactcatacataag 161  Q
    |||||||| |||| | ||||||||||||||| ||| ||||||||| |||| ||||||| || |||||||||    
T  37473397 catatacataaacgacttaactttgttttatcatttgctataaaaatagcttatgtaagcttatacataag 37473327  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 40252171 - 40252236
Alignment:
Q  83 gcttatgacatatacaaaaacaatttaactttgttttattattagctataaaattagcatatgtaa 148  Q
    |||||| |||||||||||||| ||||||||||||||||| ||| || |||||| |||| |||||||    
T  40252171 gcttataacatatacaaaaacgatttaactttgttttatcatttgcaataaaactagcttatgtaa 40252236  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 165
Target Start/End: Complemental strand, 46078144 - 46078071
Alignment:
Q  92 atatacaaaaacaatttaactttgttttattattagctataaaattagcatatgtaaactcatacataagcgct 165  Q
    ||||||||||||||||||||||||||||||  ||  |||||||| || | ||||||| || |||||||||||||    
T  46078144 atatacaaaaacaatttaactttgttttatctttttctataaaaataacttatgtaagcttatacataagcgct 46078071  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 20269581 - 20269530
Alignment:
Q  84 cttatgacatatacaaaaacaatttaactttgttttattattagctataaaa 135  Q
    ||||| |||| |||||||||||||||||||||||||||  || |||||||||    
T  20269581 cttataacatttacaaaaacaatttaactttgttttatcttttgctataaaa 20269530  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 8960698 - 8960740
Alignment:
Q  90 acatatacaaaaacaatttaactttgttttattattagctata 132  Q
    ||||||||||||||||||||||||| |||||| ||| ||||||    
T  8960698 acatatacaaaaacaatttaactttattttatcatttgctata 8960740  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 28613599 - 28613636
Alignment:
Q  84 cttatgacatatacaaaaacaatttaactttgttttat 121  Q
    ||||| || |||||||||||||||||||||||||||||    
T  28613599 cttataacttatacaaaaacaatttaactttgttttat 28613636  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 148
Target Start/End: Complemental strand, 35446051 - 35445996
Alignment:
Q  93 tatacaaaaacaatttaactttgttttattattagctataaaattagcatatgtaa 148  Q
    |||||||||||||||||||||| |||||| ||| ||||||||| |||| |||||||    
T  35446051 tatacaaaaacaatttaactttattttatcatttgctataaaaatagcttatgtaa 35445996  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 121
Target Start/End: Original strand, 37112332 - 37112360
Alignment:
Q  93 tatacaaaaacaatttaactttgttttat 121  Q
    |||||||||||||||||||||||||||||    
T  37112332 tatacaaaaacaatttaactttgttttat 37112360  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 24626292 - 24626222
Alignment:
Q  92 atatacaaaaacaatttaactttgttttattattagctataaaattagcatatgtaaactcatacataagc 162  Q
    ||||||||||||||||||||||||||||||  ||  ||||| || |||| ||||||| || ||||||||||    
T  24626292 atatacaaaaacaatttaactttgttttatcctttcctatagaaatagcttatgtaagcttatacataagc 24626222  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 30536475 - 30536405
Alignment:
Q  92 atatacaaaaacaatttaactttgttttattattagctataaaattagcatatgtaaactcatacataagc 162  Q
    |||||||||||||||||||| || |||||| ||| ||||||| | |||| |||| ||||| ||||||||||    
T  30536475 atatacaaaaacaatttaacattattttatcatttgctataataatagcttatgcaaacttatacataagc 30536405  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 19494912 - 19494844
Alignment:
Q  91 catatacaaaaacaatttaactttgttttattattagctataaaattagcatatgtaaactcatacata 159  Q
    ||||||||||||||||||| |||| |||||| ||| |||||| || |||| ||||||| || |||||||    
T  19494912 catatacaaaaacaatttagctttattttatcatttgctatagaactagcttatgtaaccttatacata 19494844  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 54069489 - 54069559
Alignment:
Q  91 catatacaaaaacaatttaactttgttttattattagctataaaattagcatatgtaaactcatacataag 161  Q
    ||||||||||||||||||||| || ||||||  || | ||||||| ||||||||| || || |||||||||    
T  54069489 catatacaaaaacaatttaacattattttatcttttgatataaaaatagcatatgcaagcttatacataag 54069559  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 17204136 - 17204064
Alignment:
Q  91 catatacaaaaacaatttaactttgttttattattagctataaaattagcatatgtaaactcatacataagcg 163  Q
    |||||||||||||||| ||||||| |||||  ||| |||||||||  ||| ||||||| || | |||||||||    
T  17204136 catatacaaaaacaatataactttattttaacatttgctataaaaacagcttatgtaagctaacacataagcg 17204064  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 41336764 - 41336728
Alignment:
Q  85 ttatgacatatacaaaaacaatttaactttgttttat 121  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  41336764 ttataacatatacaaaaacaatttaactttattttat 41336728  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 42868534 - 42868606
Alignment:
Q  92 atatacaaaaacaatttaactttgttttattattagctataaaattagcatatgtaaactcatacataagcgc 164  Q
    ||||||||||||||||||||||| ||||||  ||  |||| ||| |||| |||||||||| || |||||||||    
T  42868534 atatacaaaaacaatttaactttattttatctttttctatgaaaatagcttatgtaaacttatgcataagcgc 42868606  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 45229511 - 45229439
Alignment:
Q  90 acatatacaaaaacaatttaactttgttttattattagctataaaattagcatatgtaaactcatacataagc 162  Q
    |||||||||||||||||||||| |  ||||||  || |||||| || |||| |||||||||| ||||||||||    
T  45229511 acatatacaaaaacaatttaacctcattttatcgtttgctatagaaatagcttatgtaaacttatacataagc 45229439  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 42659223 - 42659297
Alignment:
Q  91 catatacaaaaacaatttaactttgttttattattagctataaaattagcatatgtaaactcatacataagcgct 165  Q
    |||||||||||||||||| ||||| |||||  |||  | |||||| |||| ||||||| || |||||||||||||    
T  42659223 catatacaaaaacaatttcactttattttaccattttccataaaaatagcttatgtaagcttatacataagcgct 42659297  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 41812162 - 41812231
Alignment:
Q  91 catatacaaaaacaatttaactttgttttattattagctataaaattagcatatgtaaactcatacataa 160  Q
    |||||||||||||||||||||||  |||||  ||| || |||||| |||| ||||||| || ||||||||    
T  41812162 catatacaaaaacaatttaacttcattttaccatttgccataaaaatagcttatgtaagcttatacataa 41812231  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 13325566 - 13325498
Alignment:
Q  93 tatacaaaaacaatttaactttgttttattattagctataaaattagcatatgtaaactcatacataag 161  Q
    ||||| |||| ||||||||||| |||||| |||  |||||||| |||| ||||| | ||||||||||||    
T  13325566 tatacgaaaataatttaactttattttatcattttctataaaactagcttatgttacctcatacataag 13325498  T

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