View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10337_low_20 (Length: 250)
Name: NF10337_low_20
Description: NF10337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10337_low_20 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 65 - 236
Target Start/End: Complemental strand, 32520892 - 32520723
Alignment:
| Q |
65 |
tcacactgatagagagaatttaaatagaacggaaattttttggaatgaaaacgactaccaatatatattttcaatgaattatatttaacatacatggacc |
164 |
Q |
| |
|
||||||||| | ||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| ||| |||||||| ||||| |
|
|
| T |
32520892 |
tcacactgacaaagagaatttaaatagaatggaaatttgttggaatgaaaacgactacaaatatatattttcaatgaat--tatctaacataccaggacc |
32520795 |
T |
|
| Q |
165 |
gtataattttaaatacatggtcgagatcatttacaacaattttgcaaatgcgtttatatgaaccgtctaacc |
236 |
Q |
| |
|
|||| | |||||||| | | | |||||| ||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
32520794 |
gtatgactttaaatatacgattgagatcgtttacaacaattttgcaaatgcgttaatatgaaccgtataacc |
32520723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 32525510 - 32525368
Alignment:
| Q |
1 |
ttagagaacgtactacactattctagccttctaagattgaatgtctcnnnnnnnnnnnnnnnnntcacactgatagagagaatttaaatagaacggaaat |
100 |
Q |
| |
|
|||||||||||||||| || ||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
32525510 |
ttagagaacgtactacgctgttctagccttctaggattgaatgtctcaaaaaactggaaaaaaatcacactgacagagagaatttaaatagaacgaaaat |
32525411 |
T |
|
| Q |
101 |
tttttggaatgaaaacgactaccaatatatattttcaatgaat |
143 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32525410 |
ttcttggaatgaaaacgactaccaatatatattttcaatgaat |
32525368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 32525367 - 32525304
Alignment:
| Q |
177 |
atacatggtcgagatcatttacaacaattttgcaaatgcgtttatatgaaccgtctaacctatg |
240 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
32525367 |
atacatggtcgagatcgtttacaacaattttgcaaatgcgttaatatgaactgtctaacctatg |
32525304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University