View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10337_low_23 (Length: 242)
Name: NF10337_low_23
Description: NF10337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10337_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 3 - 225
Target Start/End: Complemental strand, 9935161 - 9934939
Alignment:
| Q |
3 |
atcgaaacatgtggaatcttattcttcccaatctcagctgaatcaatatctatatgaacaatcttagccctactagcaaaagtttctaactttccagtaa |
102 |
Q |
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| T |
9935161 |
atcgaaacatgtggaatcttattcttcccaatctcagctgaatcaatatctatatgaacaatcttagccctactagcaaaagtttctaactttccagtaa |
9935062 |
T |
|
| Q |
103 |
ctctatcatcaaacctaaccccaaaagcaagcaacaaatcactattatcaacagcataattagcataaaccgtaccatgcaaacccaacattgaaagaga |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9935061 |
ctctatcatcaaacctaaccccaaaagcaagcaacaaatcactattatcaacagcataattagcataaaccgtaccatgcaaacccaacattgaaagaga |
9934962 |
T |
|
| Q |
203 |
atattcacctccaatagggtaac |
225 |
Q |
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||||||||||||||||||||||| |
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| T |
9934961 |
atattcacctccaatagggtaac |
9934939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 3472568 - 3472405
Alignment:
| Q |
20 |
cttattcttcccaatctcagctgaatcaatatctatatgaacaatcttagccctactagcaaaagtttctaactttccagtaactctatcatcaaaccta |
119 |
Q |
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||||||||||||||||||||| | ||||||||| |||||||||||||| |||| || ||||||| || | ||| |||||||| | ||||||||||||| |
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| T |
3472568 |
cttattcttcccaatctcagcagcatcaatatcaatatgaacaatcttcgcccggctcgcaaaagcctcaagcttcccagtaacccgatcatcaaaccta |
3472469 |
T |
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| Q |
120 |
accccaaaagcaagcaacaaatcactattatcaacagcataattagcataaaccgtaccatgca |
183 |
Q |
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| T |
3472468 |
accccaaacgcaagcaaaagatcactcttatcaaccgcataattagcataaactgtcccatgca |
3472405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 45477099 - 45476884
Alignment:
| Q |
11 |
atgtggaatcttattcttcccaatctcagctgaatcaatatctatatgaacaatcttagccctactagcaaaagtttctaactttccagtaactctatca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45477099 |
atgtggaatcttattcttcccaatctcagctgaatcaatatctatatgaacaatcttagccctactagcaaaagcttctaactttccagtaactctatca |
45477000 |
T |
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| Q |
111 |
tcaaacctaaccccaaaagcaagcaacaaatcactattatcaacagcataattagcataaaccgtaccatgcaaacccaacattgaaagagaatattcac |
210 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||| ||||| |
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| T |
45476999 |
tcaaacctaaccccaaaagcaagcaacagatcactattatcaacagcataattagcataaacagttccatgcatacccaacattgaaagagaatgttcac |
45476900 |
T |
|
| Q |
211 |
ctccaatagggtaact |
226 |
Q |
| |
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|||||||||| ||||| |
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| T |
45476899 |
ctccaataggataact |
45476884 |
T |
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