View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10337_low_3 (Length: 430)
Name: NF10337_low_3
Description: NF10337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10337_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 29 - 420
Target Start/End: Original strand, 52725305 - 52725699
Alignment:
| Q |
29 |
tcttccttcctttaacactctttttt-atatttttactgttcatttaatcaaggatcaatttagttcctaaaca--ttcattctttctccaatttacttt |
125 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||| | | ||| |||| | | | || |||||||||||||||||||||||| |
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| T |
52725305 |
tctttcttcctttaacactctttttttatatttttactgttcatttaattcatgttca-tttaatcaatgatcaatttcattctttctccaatttacttt |
52725403 |
T |
|
| Q |
126 |
caactctcatgagatttactaactaatgtattgttggtaaatatactcttctcactcatgatttatctactgttttctcatcctttaattct-tacttgc |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
52725404 |
caactctcatgagatttactaactaatgtattgttggtaaatatacccttctcactcatgatttatctactgttttctcatcctttaattctctacttgc |
52725503 |
T |
|
| Q |
225 |
aacttattcccttcatttccagcaattatcgacagtagaatggccgcaaaagacatatccgagcatgatatcattcaagttagtcttttcccccattcat |
324 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
52725504 |
aacttattcccttcatttccagcaattattgacagtagaatggccgcaaaagacatatccaagcatgatatcattcaagttagtcttttcccccattcat |
52725603 |
T |
|
| Q |
325 |
ttacttcatcctttgattagctattgaaaatacaaaattagtatttacattgctgagcttcatattgcttatctgagatatctttgacaccctttg |
420 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52725604 |
ttacttcatccttagattagctattgaaaatacaaaattagtatttacattgctgagcttcatattgcttatctgagatatctttgacaccctttg |
52725699 |
T |
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