View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10337_low_4 (Length: 381)
Name: NF10337_low_4
Description: NF10337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10337_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 167 - 320
Target Start/End: Complemental strand, 40892251 - 40892098
Alignment:
| Q |
167 |
tggcaatgataaactacactccacttagtgagctacttcaatgaaacaaaccagccatcaaaccaacatgacaccttctgctgttgcaatcaaaccacca |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40892251 |
tggcaatgataaactacactccacttagtgagctacttcaatgaaacaaaccagccatcaaaccaacatgacaccttctgctgttgcaatcaaactacca |
40892152 |
T |
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| Q |
267 |
aggcacaaaccagaaaagcagcaaggaggatctcttatgttctctttctctaat |
320 |
Q |
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| T |
40892151 |
aggcacaaaccagaaaagcagcaaggaggatctcttatgttctctttctctaat |
40892098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 167 - 320
Target Start/End: Complemental strand, 44143694 - 44143541
Alignment:
| Q |
167 |
tggcaatgataaactacactccacttagtgagctacttcaatgaaacaaaccagccatcaaaccaacatgacaccttctgctgttgcaatcaaaccacca |
266 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44143694 |
tggcaatgataaaccatactccacttagtgagctacttcaatgaaacaaaccagccatcaaaccaacatgacaccttctgctgttgcaatcaaaccacca |
44143595 |
T |
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| Q |
267 |
aggcacaaaccagaaaagcagcaaggaggatctcttatgttctctttctctaat |
320 |
Q |
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| T |
44143594 |
aggcacaaaccagaaaagcagcacggaggatctcttatgttctctttctctaat |
44143541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 40892414 - 40892339
Alignment:
| Q |
4 |
atgaatcatgattgatccaagtcaattgaatcaaatatttgaattatgcactcatacattgccttctttaaagccg |
79 |
Q |
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| T |
40892414 |
atgaatcatgattgatccaagtcaattgaatcaaatatttgaattatgcactcatacattgccttctttaaagccg |
40892339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 44143828 - 44143779
Alignment:
| Q |
30 |
tgaatcaaatatttgaattatgcactcatacattgccttctttaaagccg |
79 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44143828 |
tgaatcaaatatttgaattatgcactcatacattgccttctttaaagccg |
44143779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 318 - 365
Target Start/End: Complemental strand, 44140818 - 44140771
Alignment:
| Q |
318 |
aatacgaataaatgataacaaataatactagtaacacaatattgtttg |
365 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
44140818 |
aatacgaataaatgataacaaataatactagtaacgcaattttgtttg |
44140771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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