View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10337_low_6 (Length: 366)
Name: NF10337_low_6
Description: NF10337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10337_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 41291890 - 41292227
Alignment:
| Q |
18 |
acttcagcataacgagcagtaaccctagctagcatagtaggattaggatggtcctaaccaataaccacaaatatactactattgtacgagtaaataaagt |
117 |
Q |
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| T |
41291890 |
acttcagcataacgagcagtaaccctagctagcatagtaggattaggatggtcctaaccaataaccacaaatatactactattgtacgagtaaataaagt |
41291989 |
T |
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| Q |
118 |
tatttttatacacataaagaaatatgaaagtggaccaccctatcatagcctggttgtgtggcacgttgttctagcatgaaacctgttcaaaaatgtgact |
217 |
Q |
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| T |
41291990 |
tatttttatacacataaagaaatatgaaagtggaccaccctatcatagcctggttgtgtggcacgttgttctaacatgaaacctgttcaaaaatgtgact |
41292089 |
T |
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| Q |
218 |
caaatgaaatcatgtctcagagttcaactgtgttctaactcgcgccagataaatcccccgccatttgtggagtctccaattgacttgacccctctatata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41292090 |
caaatgaaatcatgtctcagagttcaactgtgttctaactcgcgccagataaatcccccgccatttgtggagtctccaattgacttgacccctctatata |
41292189 |
T |
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| Q |
318 |
tcccatggccgcaccttattgttattactttgcttctt |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
41292190 |
tcccatggccgcaccttattgttattactttgcttctt |
41292227 |
T |
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