View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10337_low_9 (Length: 344)
Name: NF10337_low_9
Description: NF10337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10337_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 23422408 - 23422749
Alignment:
| Q |
1 |
ataatcaaccgtgttaagccacccattgctaagggacaatcgcaaagaacatgcgatgttgttttgatagtaattatacacttgtgacagtttgcagttc |
100 |
Q |
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| T |
23422408 |
ataatcaaccccgttaagccacc-attgctaagggacaatcgcaaagaacatgcgatgttgttttgatagtaattatacacttgtgacagtttgcagttc |
23422506 |
T |
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| Q |
101 |
acagatacatgatctgcaatctgctattagttaagagtttatcgtgtttgagcaaccacgcaaacttattccctttggggcattaaaattacacactcgc |
200 |
Q |
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| T |
23422507 |
acagatacatgatctgcaatctgctattagtaaagagtttatcgtgtttgagcaaccacgcaaacttattccctttggggcattaaaattacacactcgc |
23422606 |
T |
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| Q |
201 |
acccaatagctggaaacaggtttaattaaaccaccacataactgtttacaagcttgactgcttgagcaactgagaaatctccaaaactcacaccaggcta |
300 |
Q |
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| T |
23422607 |
acccaatagctggaaacaggtttaattaaaccaccacataactgtttacaagcttgactgcttgagcaactgagaaatctccaaaactcacaccaggcta |
23422706 |
T |
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| Q |
301 |
tgcagaaacatcaccacccttgcaaatcattcacaggttctgc |
343 |
Q |
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| T |
23422707 |
tgcagaaacatcaccacccttgcaaatcattcacaagttctgc |
23422749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 23876697 - 23876477
Alignment:
| Q |
1 |
ataatcaaccgtgttaagccacccattgctaagggacaatcgcaaagaacatgcgatgttgttttgatagtaattatacacttgtgacagtttgcagttc |
100 |
Q |
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| T |
23876697 |
ataatcaaccgcgttaagtcacc-attgctaagagacaaccgcgaagaacatgcaatgtcgttttgatagtttctatacagtggtgacagtgtgcagt-- |
23876601 |
T |
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| Q |
101 |
acagatacatgatctgcaatctgctattagttaagagtttatcgtgtttgagcaaccacgcaaacttattccctttggggcattaaaattacacactcgc |
200 |
Q |
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| T |
23876600 |
--------atgacctgcaatctgct-----ttaagagtttatcgtgta--agcaaccacgcaaacgtattccctttggggcattaattttacacatccgt |
23876516 |
T |
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| Q |
201 |
acccaatagctggaaacaggtttaattaaaccaccacata |
240 |
Q |
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| T |
23876515 |
gaccaatagctggaaacagg-ttaaataaaacaccacata |
23876477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 257
Target Start/End: Original strand, 23420391 - 23420555
Alignment:
| Q |
93 |
tgcagttcacagatacatgatctgcaatctgctattagttaagagtttatcgtgtttgagcaaccacgcaaacttattccctttggggcattaaaattac |
192 |
Q |
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|||||||| |||| ||||| ||||||||||||||| |||| || |||| |||||| |||||||| ||||| || || || | |||||||| || |
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| T |
23420391 |
tgcagttctgagatgcatgacttgcaatctgctattacttaaccgtctatcttgtttgcgcaaccacacaaacgtactctctctcgggcattatttttca |
23420490 |
T |
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| Q |
193 |
acactcgcacccaatagctggaaacaggtttaattaaaccaccacataactgtttacaagcttga |
257 |
Q |
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|||| | || |||||||||| ||| |||| || |||| |||||||||||| |||| |||||||| |
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| T |
23420491 |
acacccccatccaatagctgaaaattggttcaactaaatcaccacataactctttataagcttga |
23420555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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