View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10338_high_3 (Length: 348)
Name: NF10338_high_3
Description: NF10338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10338_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 37600266 - 37600066
Alignment:
| Q |
11 |
cagagaacacacccttttgctttcaccactagctgctccgtgtgaacagtataaaaaatgttctctcctgtatactcacataaagatccttttccaaaga |
110 |
Q |
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| T |
37600266 |
cagagaacacacccttttgctttcaccactagctgctccgtgtgaacagtataaaaaatgttctctcttgtatactcacataaagatccttttccaaaga |
37600167 |
T |
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| Q |
111 |
tatatgatttcttgctacgaatcaccgtttcatttgtataaattgacactacaaatattttcttcatctcactattataccaaccattactgcaaatatc |
210 |
Q |
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| T |
37600166 |
tatatgatttcttgctacgaatcaccatttcatttgtataaattgacactacaaatattttcttcatctcactattataccaaccattactgcaaatatc |
37600067 |
T |
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| Q |
211 |
a |
211 |
Q |
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| T |
37600066 |
a |
37600066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 225 - 333
Target Start/End: Complemental strand, 37599555 - 37599447
Alignment:
| Q |
225 |
aaatgcgccttccctatgaaattttagaggctattgaaaatgatcccgagctaatgtggcttctaatcatgcaaatgcttctgtttatcatttcagttca |
324 |
Q |
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| T |
37599555 |
aaatgcgccttccctatgaaattttagaggctattgaaaatgatcccgagctaatgtggcttctaatcatgcaaatgcttctgtttatcatttcagttca |
37599456 |
T |
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| Q |
325 |
ggtcttatt |
333 |
Q |
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| T |
37599455 |
ggtcttatt |
37599447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 73 - 174
Target Start/End: Complemental strand, 37606516 - 37606415
Alignment:
| Q |
73 |
ctctcctgtatactcacataaagatccttttccaaagatatatgatttcttgctacgaatcaccgtttcatttgtataaattgacactacaaatattttc |
172 |
Q |
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| T |
37606516 |
ctctcttgcatacccacatatagatccttctccaaagatatatgatttcttgctaccaatctccattgcatttgtataaattgatactacaaatattttc |
37606417 |
T |
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| Q |
173 |
tt |
174 |
Q |
| |
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|| |
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| T |
37606416 |
tt |
37606415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 34751057 - 34750991
Alignment:
| Q |
91 |
taaagatccttttcc-aaagatatatgatttcttgctacgaatcaccgtttcatttgtataaattga |
156 |
Q |
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| T |
34751057 |
taaagatccttttcccaaagatatatgatttcttgctaccaatctccatagcatttgtataaattga |
34750991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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