View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10338_low_1 (Length: 634)

Name: NF10338_low_1
Description: NF10338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10338_low_1
NF10338_low_1
[»] chr1 (1 HSPs)
chr1 (17-625)||(47836228-47836830)
[»] chr2 (2 HSPs)
chr2 (52-220)||(45393958-45394120)
chr2 (530-572)||(11650798-11650840)
[»] chr4 (5 HSPs)
chr4 (452-515)||(29779138-29779202)
chr4 (141-211)||(13539205-13539275)
chr4 (50-104)||(13539294-13539348)
chr4 (158-225)||(52740534-52740601)
chr4 (454-515)||(17898212-17898274)
[»] chr7 (2 HSPs)
chr7 (141-211)||(9668181-9668251)
chr7 (50-104)||(9668270-9668324)
[»] chr6 (1 HSPs)
chr6 (459-515)||(1872308-1872365)
[»] chr8 (1 HSPs)
chr8 (29-86)||(35782207-35782264)
[»] chr3 (1 HSPs)
chr3 (454-503)||(46870357-46870407)
[»] chr5 (1 HSPs)
chr5 (452-515)||(1879094-1879158)


Alignment Details
Target: chr1 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 17 - 625
Target Start/End: Original strand, 47836228 - 47836830
Alignment:
Q  17 ataaatcaataagaaattcttcaacctacgaaaagtacaatagacaatatgaggaggcattaaagatgttagagttagagaagaagaagaaactagcaga 116  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||    
T  47836228 ataaatcaataggaaattcttcaacctacgaaaagtacaatagacaatatgaggaggcattaaagatgttagagttagagaagaagaa---actaacaga 47836324  T
Q  117 tactgaaattttggcggccaagtttttgaagaaaggtgattggtggaatgattcaattgacaatatgagtagtgaagagcttaaacaatttatggtgtcc 216  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  47836325 tgctgaaattttggcggccaagtttttgaagaaaggtgattggtggaatgattcaattgacaatatgagtagtgaagtgcttgaacaatttatggtgtcc 47836424  T
Q  217 atttttgaggattaagggtgtgtaattgaacataatttatattcttctcgacatctccaacaatgccaatctagaattgtcaattatcagtaaacaatag 316  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  47836425 atttt-gaggattaagggtgtgtaattgaacataatttatattcttctcgacatctccaacaatgccaatctagaattgtcaattaccagtaaacagtag 47836523  T
Q  317 taggtattggcaggttaggggcattcaagatcagcccaacaaaatttaatgcttaaagaaaaatgtattggttcaactcctatctataatgaataaataa 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47836524 taggtattggcaggttaggggcattcaagatcagcccaacaaaatttaatgcttaaagagaaatgtattggttcaactcctatctataatgaataaataa 47836623  T
Q  417 ataatatttggtttcatttttggagaatcaaaagtgattgttgaattgattttatcatgttggatgattaaaaggaaaattgattttgcttgtagaattt 516  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47836624 ataatatttggtttcatttttggagaat-aaaagtgattgttgaattgattttatcatgtttgatgattaaaaggaaaattgattttgcttgtagaattt 47836722  T
Q  517 atttttacttagaagttaaaatttgaagtttgtcttctaaaagtgatgttagcctttgtatcgcgaaaaactagttgtgtttttctacaattggcctctc 616  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||    
T  47836723 atttttactt-gaagttaaaatttgaagtttgtcttctaaaagtgatgttagcctttgtattgcgaaaaactaattgtgtttttctacaattgtcctctc 47836821  T
Q  617 gcctttgct 625  Q
    |||||||||    
T  47836822 gcctttgct 47836830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 52 - 220
Target Start/End: Complemental strand, 45394120 - 45393958
Alignment:
Q  52 tacaatagacaatatgaggaggcattaaagatgttagagttagagaagaagaagaaactagcagatactgaaattttggcggccaagtttttgaagaaag 151  Q
    ||||||||||||||||||||||||  ||||||||| |||  |  ||| ||||||||||||| ||||  | ||| ||||||    ||| |||| || || |    
T  45394120 tacaatagacaatatgaggaggcacaaaagatgttggag--acggaa-aagaagaaactagaagatgttcaaaatttggct---aagattttcaacaagg 45394027  T
Q  152 gtgattggtggaatgattcaattgacaatatgagtagtgaagagcttaaacaatttatggtgtccattt 220  Q
    |||| ||||||||||||||||||||  |||||||||||||  ||||| |||||||||||||||||||||    
T  45394026 gtgactggtggaatgattcaattgatgatatgagtagtgatcagcttgaacaatttatggtgtccattt 45393958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 530 - 572
Target Start/End: Complemental strand, 11650840 - 11650798
Alignment:
Q  530 agttaaaatttgaagtttgtcttctaaaagtgatgttagcctt 572  Q
    |||||||||||| |||||| |||||||||||||||||||||||    
T  11650840 agttaaaatttgtagtttgacttctaaaagtgatgttagcctt 11650798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 452 - 515
Target Start/End: Complemental strand, 29779202 - 29779138
Alignment:
Q  452 gattgttgaattgattttatcatgtt-ggatgattaaaaggaaaattgattttgcttgtagaatt 515  Q
    |||||| ||||||||||||||||||| |||||||| ||| || ||||||||||||||||||||||    
T  29779202 gattgtagaattgattttatcatgtttggatgatttaaaagagaattgattttgcttgtagaatt 29779138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 13539275 - 13539205
Alignment:
Q  141 tttgaagaaaggtgattggtggaatgattcaattgacaatatgagtagtgaagagcttaaacaatttatgg 211  Q
    |||||| ||| | ||||||||||||||||| |||||  ||||||||| |||||||||| ||||||||||||    
T  13539275 tttgaacaaaagcgattggtggaatgattccattgatgatatgagtattgaagagcttgaacaatttatgg 13539205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 13539348 - 13539294
Alignment:
Q  50 agtacaatagacaatatgaggaggcattaaagatgttagagttagagaagaagaa 104  Q
    |||||||||||| |||||||||||||||||| ||||| ||||  |||||||||||    
T  13539348 agtacaatagacgatatgaggaggcattaaaaatgttggagtcggagaagaagaa 13539294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 52740601 - 52740534
Alignment:
Q  158 ggtggaatgattcaattgacaatatgagtagtgaagagcttaaacaatttatggtgtccatttttgag 225  Q
    |||||||||||||||||||  |||||||||||||  | ||| ||||||||||| | ||||||| ||||    
T  52740601 ggtggaatgattcaattgatgatatgagtagtgatcaacttgaacaatttatgatatccatttatgag 52740534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 454 - 515
Target Start/End: Complemental strand, 17898274 - 17898212
Alignment:
Q  454 ttgttgaattgattttatcatgtt-ggatgattaaaaggaaaattgattttgcttgtagaatt 515  Q
    |||| ||||||||| ||||||||| ||||| || |||| | ||||||||||||||||||||||    
T  17898274 ttgtagaattgattgtatcatgtttggatggtttaaagtataattgattttgcttgtagaatt 17898212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 9668251 - 9668181
Alignment:
Q  141 tttgaagaaaggtgattggtggaatgattcaattgacaatatgagtagtgaagagcttaaacaatttatgg 211  Q
    |||||| ||| | ||||||||||||||||| |||||  ||||||||| |||||||||| ||||||||||||    
T  9668251 tttgaacaaaagcgattggtggaatgattccattgatgatatgagtattgaagagcttgaacaatttatgg 9668181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 9668324 - 9668270
Alignment:
Q  50 agtacaatagacaatatgaggaggcattaaagatgttagagttagagaagaagaa 104  Q
    |||||||||||| |||||||||||||||||| ||||| ||||  |||||||||||    
T  9668324 agtacaatagacgatatgaggaggcattaaaaatgttggagtcggagaagaagaa 9668270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 459 - 515
Target Start/End: Complemental strand, 1872365 - 1872308
Alignment:
Q  459 gaattgattttatcatgtt-ggatgattaaaaggaaaattgattttgcttgtagaatt 515  Q
    |||||| |||||||||||| |||||||| ||| |||||||||||||||||||||||||    
T  1872365 gaattgtttttatcatgtttggatgatttaaaagaaaattgattttgcttgtagaatt 1872308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 35782207 - 35782264
Alignment:
Q  29 gaaattcttcaacctacgaaaagtacaatagacaatatgaggaggcattaaagatgtt 86  Q
    |||||||||| |||||| || ||||||||| |||||||||||||||| ||||| ||||    
T  35782207 gaaattcttcgacctacaaagagtacaataaacaatatgaggaggcactaaaggtgtt 35782264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 454 - 503
Target Start/End: Original strand, 46870357 - 46870407
Alignment:
Q  454 ttgttgaattgattttatcatg-ttggatgattaaaaggaaaattgatttt 503  Q
    |||| ||||||||||||||||| |||||||||| |||||| ||||||||||    
T  46870357 ttgtagaattgattttatcatgtttggatgatttaaaggataattgatttt 46870407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 452 - 515
Target Start/End: Original strand, 1879094 - 1879158
Alignment:
Q  452 gattgttgaattgattttatcatg-ttggatgattaaaaggaaaattgattttgcttgtagaatt 515  Q
    |||||| ||||||||||||||||| |||||||| | ||| || |||| ||||| |||||||||||    
T  1879094 gattgtagaattgattttatcatgtttggatgagttaaaagagaatttattttacttgtagaatt 1879158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University