View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10338_low_11 (Length: 239)

Name: NF10338_low_11
Description: NF10338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10338_low_11
NF10338_low_11
[»] chr3 (16 HSPs)
chr3 (97-224)||(41946689-41946816)
chr3 (1-84)||(11639437-11639520)
chr3 (1-84)||(8695477-8695560)
chr3 (1-84)||(9047364-9047447)
chr3 (3-84)||(33121905-33121986)
chr3 (12-84)||(1764603-1764675)
chr3 (5-84)||(25341924-25342004)
chr3 (5-84)||(26845341-26845420)
chr3 (6-65)||(32233670-32233729)
chr3 (5-84)||(19221599-19221676)
chr3 (12-84)||(49500930-49501003)
chr3 (141-185)||(25745837-25745881)
chr3 (5-77)||(36634916-36634988)
chr3 (5-84)||(47536740-47536820)
chr3 (12-84)||(43122275-43122348)
chr3 (5-84)||(32093502-32093582)
[»] chr6 (4 HSPs)
chr6 (1-84)||(17079777-17079860)
chr6 (6-84)||(6831522-6831600)
chr6 (3-62)||(9199839-9199898)
chr6 (5-80)||(11061444-11061520)
[»] chr1 (15 HSPs)
chr1 (1-84)||(10711690-10711773)
chr1 (1-84)||(10722510-10722593)
chr1 (1-84)||(25592060-25592143)
chr1 (6-84)||(30111515-30111593)
chr1 (3-84)||(40292672-40292753)
chr1 (17-84)||(1395036-1395103)
chr1 (5-84)||(9903855-9903934)
chr1 (5-84)||(41061735-41061814)
chr1 (5-84)||(47107254-47107334)
chr1 (5-84)||(49968797-49968877)
chr1 (12-84)||(12173676-12173749)
chr1 (5-84)||(17707467-17707546)
chr1 (9-84)||(47586791-47586868)
chr1 (13-84)||(21335822-21335894)
chr1 (151-220)||(41181608-41181677)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-84)||(181600-181683)
[»] chr4 (16 HSPs)
chr4 (5-84)||(19164457-19164536)
chr4 (1-84)||(31863737-31863820)
chr4 (1-84)||(34005365-34005448)
chr4 (3-84)||(42777710-42777791)
chr4 (3-84)||(52741425-52741506)
chr4 (4-84)||(18107145-18107225)
chr4 (5-84)||(34322909-34322988)
chr4 (5-84)||(30274403-30274482)
chr4 (5-84)||(42822915-42822994)
chr4 (5-84)||(1844848-1844928)
chr4 (5-84)||(12881275-12881355)
chr4 (6-84)||(53779514-53779594)
chr4 (5-84)||(449522-449601)
chr4 (5-84)||(53487543-53487622)
chr4 (11-84)||(10563904-10563978)
chr4 (6-84)||(29213571-29213651)
[»] chr7 (10 HSPs)
chr7 (1-83)||(24752890-24752972)
chr7 (5-84)||(20037590-20037670)
chr7 (5-84)||(18654423-18654503)
chr7 (4-84)||(34231170-34231250)
chr7 (5-84)||(20047721-20047801)
chr7 (12-84)||(29114146-29114218)
chr7 (11-84)||(7459266-7459340)
chr7 (12-84)||(10282419-10282492)
chr7 (5-84)||(46177725-46177804)
chr7 (9-84)||(4076744-4076821)
[»] chr8 (8 HSPs)
chr8 (4-84)||(10584004-10584084)
chr8 (5-65)||(45256415-45256475)
chr8 (4-84)||(8446759-8446839)
chr8 (5-84)||(17658303-17658383)
chr8 (5-84)||(31082197-31082277)
chr8 (9-84)||(10267576-10267652)
chr8 (8-81)||(26030965-26031038)
chr8 (5-84)||(29470786-29470866)
[»] chr2 (7 HSPs)
chr2 (4-84)||(3000337-3000417)
chr2 (5-84)||(9393007-9393087)
chr2 (12-84)||(7075583-7075655)
chr2 (4-84)||(22295919-22296000)
chr2 (12-84)||(18704391-18704464)
chr2 (40-84)||(1379570-1379614)
chr2 (5-77)||(24314014-24314086)
[»] chr5 (7 HSPs)
chr5 (5-84)||(6048707-6048787)
chr5 (18-84)||(27895376-27895442)
chr5 (5-84)||(20209310-20209389)
chr5 (5-84)||(4416290-4416369)
chr5 (5-84)||(4922705-4922784)
chr5 (5-84)||(34875027-34875107)
chr5 (5-84)||(8891966-8892046)
[»] scaffold0227 (1 HSPs)
scaffold0227 (7-84)||(8380-8457)
[»] scaffold0481 (1 HSPs)
scaffold0481 (12-84)||(1344-1416)
[»] scaffold0308 (1 HSPs)
scaffold0308 (5-84)||(11550-11630)
[»] scaffold0765 (1 HSPs)
scaffold0765 (11-84)||(1382-1455)


Alignment Details
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 97 - 224
Target Start/End: Complemental strand, 41946816 - 41946689
Alignment:
Q  97 tcaaccaccaaggttaatcattcgtgaccttagaatagactacgtgaagacaataaaactatataactagggtcaaacggcataaatatctaannnnnnn 196  Q
    ||||||||||||||||||||  ||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||           
T  41946816 tcaaccaccaaggttaatcacacgtaaccttagaataaactacgtgaagacaataaaactatataattagggtcaaacggcataaatatctaattttttt 41946717  T
Q  197 gttaaaaatacaataagcaagtggagac 224  Q
    ||||||||||||||||||||||||||||    
T  41946716 gttaaaaatacaataagcaagtggagac 41946689  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 11639520 - 11639437
Alignment:
Q  1 tgtatttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    |||||||||||||||||||||||||||||||  |||| |||||||||| |||||||||||||||| ||||||||||||||||||    
T  11639520 tgtatttgtaaagtagttcttttggcacaccttgtgcaagaagagttgattttggtggttaatataattccatttttgattgtt 11639437  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 8695477 - 8695560
Alignment:
Q  1 tgtatttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    ||||||||||||||||||||| |||||||||  ||||||||||||||| |||||||||||||||| |||  ||||||| |||||    
T  8695477 tgtatttgtaaagtagttcttgtggcacaccttgtgctagaagagttgcttttggtggttaatataattatatttttgtttgtt 8695560  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 9047364 - 9047447
Alignment:
Q  1 tgtatttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    ||||||||||||||||||||| |||||||||  ||||||||||||||| |||||||||||||||| |||  ||||||| |||||    
T  9047364 tgtatttgtaaagtagttcttgtggcacaccttgtgctagaagagttgcttttggtggttaatataattatatttttgtttgtt 9047447  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 33121905 - 33121986
Alignment:
Q  3 tatttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    |||||||| ||||| ||||||| ||||||   ||| |||||||||| |||||||| ||||||| ||||||||||||||||||    
T  33121905 tatttgtagagtagctcttttgacacaccttatgccagaagagttgcttttggtgattaatataattccatttttgattgtt 33121986  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 1764675 - 1764603
Alignment:
Q  12 agtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    ||||||||||||||||||||   || ||||||||||| |||||||| ||||||| ||| ||||||||||||||    
T  1764675 agtagttcttttggcacaccttatgttagaagagttgcttttggtgattaatataatttcatttttgattgtt 1764603  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 25341924 - 25342004
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    |||||||||||||||||||||||||||   |||||||   |||| |||||||||||||||| |||| ||||||||||||||    
T  25341924 tttgtaaagtagttcttttggcacaccttatgctagagtggttgcttttggtggttaatatatatttcatttttgattgtt 25342004  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 26845420 - 26845341
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    ||||||||||| ||||||| |||||||  |||||||| |||||| ||||||| |||||||| |||||||||||||||||||    
T  26845420 tttgtaaagtaattcttttagcacaccttgtgctagaggagttgcttttggt-gttaatatatattccatttttgattgtt 26845341  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 32233670 - 32233729
Alignment:
Q  6 ttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat 65  Q
    ||||| ||||||||||||||||||||  |||||||| |||||| ||||||||||||||||    
T  32233670 ttgtagagtagttcttttggcacaccttgtgctagaggagttgcttttggtggttaatat 32233729  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 19221676 - 19221599
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    ||||||||||||||   ||||||||||  |||||||| |||||| ||||||| |||||||| |||||||||||| ||||||    
T  19221676 tttgtaaagtagtt---ttggcacaccttgtgctagaggagttgcttttggttgttaatatatattccattttttattgtt 19221599  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 49500930 - 49501003
Alignment:
Q  12 agtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    |||| ||||||||||||| |  |||||||| |||||| |||| ||||||||||| ||||||||||||| |||||    
T  49500930 agtaattcttttggcacatcttgtgctagaggagttgctttttgtggttaatatatattccatttttgcttgtt 49501003  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 25745881 - 25745837
Alignment:
Q  141 tgaagacaataaaactatataactagggtcaaacggcataaatat 185  Q
    |||||||||||| ||||||||| ||||||||||| ||||||||||    
T  25745881 tgaagacaataatactatataagtagggtcaaactgcataaatat 25745837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 36634988 - 36634916
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccattttt 77  Q
    |||||| |||||||||| |||||||||   | ||| |||||||| |||||||| ||||||| |||||||||||    
T  36634988 tttgtagagtagttcttctggcacaccttatactaaaagagttgcttttggtgattaatataattccattttt 36634916  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 47536820 - 47536740
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    |||||| ||||| |||||||||||| |  |||||| | ||| |||||||||||||||||||  ||||||||||| ||||||    
T  47536820 tttgtagagtagctcttttggcacatcttgtgctacaggagctgtttttggtggttaatataaattccattttttattgtt 47536740  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 43122275 - 43122348
Alignment:
Q  12 agtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    |||| ||||||||||||| |   ||||||| |||||| |||| ||||||||||| ||||||||||||| |||||    
T  43122275 agtaattcttttggcacatcttatgctagaggagttgctttttgtggttaatatatattccatttttgcttgtt 43122348  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 32093502 - 32093582
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    |||||| ||||| ||||||||||| ||  || ||| | ||| || |||||||||||||||| ||| |||||||||||||||    
T  32093502 tttgtagagtagctcttttggcacgccttgtactataggagctgcttttggtggttaatatatatcccatttttgattgtt 32093582  T

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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 17079777 - 17079860
Alignment:
Q  1 tgtatttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||  |||||||||||||||| ||||||||||||||||||    
T  17079777 tgtatttgtaaagtagttcttttggcacaccttgtgctagaagagtttcttttggtggttaatataattccatttttgattgtt 17079860  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 6831522 - 6831600
Alignment:
Q  6 ttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    ||||||||||||||||||||||||||  ||||||||||||||| |||||||| ||||||| ||||||||||||||||||    
T  6831522 ttgtaaagtagttcttttggcacaccttgtgctagaagagttgcttttggtgattaatataattccatttttgattgtt 6831600  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 9199839 - 9199898
Alignment:
Q  3 tatttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaa 62  Q
    |||||||| ||||||||||||| ||||||  ||||||||||||||| |||||||| ||||    
T  9199839 tatttgtagagtagttcttttgacacaccttgtgctagaagagttgcttttggtgattaa 9199898  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 11061444 - 11061520
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgat 80  Q
    |||||| ||||| ||||||||||||||  ||||||   ||| || |||||||||||| ||| |||||||||||||||    
T  11061444 tttgtagagtagctcttttggcacaccttgtgctacttgagctgcttttggtggttattatatattccatttttgat 11061520  T

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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 10711690 - 10711773
Alignment:
Q  1 tgtatttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||| ||| ||||||||||||||    
T  10711690 tgtatttgtaaagtagttcttttggcacaccttgtgctagaagagttgcttttggtggttaatataatttcatttttgattgtt 10711773  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 10722593 - 10722510
Alignment:
Q  1 tgtatttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||| |||||||||||| |||||    
T  10722593 tgtatttgtaaagtagttcttttggcacaccttgtgctagaagagttgcttttggtggttaatataattccatttttgtttgtt 10722510  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 25592060 - 25592143
Alignment:
Q  1 tgtatttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    ||||||||||||||||||||| |||||||||  ||||||||||||||| |||||||||||||||| |||||||||||| |||||    
T  25592060 tgtatttgtaaagtagttcttgtggcacaccttgtgctagaagagttgcttttggtggttaatataattccatttttgtttgtt 25592143  T

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Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 30111515 - 30111593
Alignment:
Q  6 ttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||| || ||||||| ||||||||||||||||||    
T  30111515 ttgtaaagtagttcttttggcacaccttgtgctagaagagttgtttttgatgattaatataattccatttttgattgtt 30111593  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 40292672 - 40292753
Alignment:
Q  3 tatttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    |||||||| ||||||||||||||||||||  ||||||||||||||| |||||||| ||||||| ||||||||||||||||||    
T  40292672 tatttgtagagtagttcttttggcacaccttgtgctagaagagttgcttttggtgattaatataattccatttttgattgtt 40292753  T

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Target: chr1; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 1395036 - 1395103
Alignment:
Q  17 ttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1395036 ttcttttggcacaccttgtgctagaagagttgtttttggtggttaatataattccatttttgattgtt 1395103  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 9903855 - 9903934
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    |||||| |||||||||||| |||||||  || |||||||||||| ||||||||||||| || ||||||||||||||||||    
T  9903855 tttgtagagtagttcttttagcacaccttgtactagaagagttgcttttggtggttaacataattccatttttgattgtt 9903934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 41061735 - 41061814
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    |||||| |||| ||||||| |||||||  ||||||||||||||| ||||||| |||||||| |||||||||||||||||||    
T  41061735 tttgtagagtaattcttttagcacaccttgtgctagaagagttgcttttggt-gttaatatatattccatttttgattgtt 41061814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 47107254 - 47107334
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    |||||| ||||||||||||||||||||  || ||||| |||||| ||||||| |||||||| |||| ||||||||||||||    
T  47107254 tttgtagagtagttcttttggcacaccttgtactagaggagttgcttttggtagttaatatatatttcatttttgattgtt 47107334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 49968877 - 49968797
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    |||||||||||| |||||| |||||||  ||||||||  ||||| ||||||||||||||||  ||||||||||||||||||    
T  49968877 tttgtaaagtagctcttttagcacaccttgtgctagagaagttgcttttggtggttaatataaattccatttttgattgtt 49968797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 12173749 - 12173676
Alignment:
Q  12 agtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    |||| ||||||||||||| |  |||||||| ||||||||||| ||||||||||| ||||||||||||| |||||    
T  12173749 agtaattcttttggcacatcttgtgctagaggagttgttttttgtggttaatatatattccatttttgtttgtt 12173676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 17707546 - 17707467
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    |||||| ||||| |||||| |||||||  ||||||||||||||| || ||||| ||||||| ||| | ||||||||||||    
T  17707546 tttgtagagtagctcttttagcacaccttgtgctagaagagttgcttgtggtgattaatataatttcttttttgattgtt 17707467  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 47586868 - 47586791
Alignment:
Q  9 taaagtagttcttttggcacacccagtgctagaagagtt-gtttttggtggttaatat-tattccatttttgattgtt 84  Q
    ||||||| ||| |||||||||||  ||| |||| ||||| | |||||||||||||||| ||||||||||||| |||||    
T  47586868 taaagtaattcatttggcacaccttgtgttagaggagtttgcttttggtggttaatatatattccatttttgtttgtt 47586791  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 21335822 - 21335894
Alignment:
Q  13 gtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    ||||||||||||||||| |  ||  |||| || |||||||| ||||||||||| ||||||||||||| |||||    
T  21335822 gtagttcttttggcacatcttgtcttagaggaattgttttttgtggttaatatatattccatttttgcttgtt 21335894  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 41181677 - 41181608
Alignment:
Q  151 aaaactatataactagggtcaaacggcataaatatctaannnnnnngttaaaaatacaataagcaagtgg 220  Q
    |||| ||||||| | |||||||||  |||||||||||||       ||||||||||||||||||||||||    
T  41181677 aaaagtatataaatggggtcaaacatcataaatatctaatttttttgttaaaaatacaataagcaagtgg 41181608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 181683 - 181600
Alignment:
Q  1 tgtatttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    ||||||||||||||||||||| |||||||||  ||||||||||||||| |||||||||||||||| |||||||||||| |||||    
T  181683 tgtatttgtaaagtagttcttgtggcacaccttgtgctagaagagttgcttttggtggttaatataattccatttttgtttgtt 181600  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 19164536 - 19164457
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    |||||| ||||||||||||||||||||  ||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  19164536 tttgtagagtagttcttttggcacaccttgtgctagaagagttgcttttggtggttaatataattccatttttgattgtt 19164457  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 31863820 - 31863737
Alignment:
Q  1 tgtatttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    ||||||||||||||||||||| |||||||||  ||||||||||||||| |||||||||||||||| |||||||||||| |||||    
T  31863820 tgtatttgtaaagtagttcttgtggcacaccttgtgctagaagagttgcttttggtggttaatataattccatttttgtttgtt 31863737  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 34005448 - 34005365
Alignment:
Q  1 tgtatttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    ||||||||||||||||||||| |||||||||   | |||||||||||| |||||||||||||||| |||||||||||| |||||    
T  34005448 tgtatttgtaaagtagttcttatggcacaccttatactagaagagttgcttttggtggttaatataattccatttttgtttgtt 34005365  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 42777791 - 42777710
Alignment:
Q  3 tatttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    |||||||| ||||||||||||||||||||  ||||||||||||||| |||||||| ||| ||| |||||||||||| |||||    
T  42777791 tatttgtagagtagttcttttggcacaccttgtgctagaagagttgcttttggtgattattataattccatttttgtttgtt 42777710  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 52741425 - 52741506
Alignment:
Q  3 tatttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    ||||| || ||||||||||||||||||||  ||||||||||||||| |||||||| ||||||| ||| ||||||||||||||    
T  52741425 tatttatagagtagttcttttggcacaccttgtgctagaagagttgcttttggtgattaatataatttcatttttgattgtt 52741506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 18107145 - 18107225
Alignment:
Q  4 atttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    ||||||| ||||||||||||||||||||  |||| |||||||||| |||||||| ||||||| ||||||||||| ||||||    
T  18107145 atttgtagagtagttcttttggcacaccttgtgccagaagagttgcttttggtgattaatataattccattttttattgtt 18107225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 34322909 - 34322988
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    |||||| ||||| ||||||||||||||  |||||||||||||||||||||||| || |||| ||||||||||| ||||||    
T  34322909 tttgtagagtagctcttttggcacaccttgtgctagaagagttgtttttggtgatttatataattccattttttattgtt 34322988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 30274403 - 30274482
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    |||||| ||||| |||||||||||| |   |||||||||||||| |||||||| ||||||| ||||||||||||||||||    
T  30274403 tttgtagagtagctcttttggcacatcttatgctagaagagttgcttttggtgattaatataattccatttttgattgtt 30274482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 42822994 - 42822915
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    |||||| ||||| |||||||||||||   ||||||||||||||| |||||||| || |||| ||||||||||||||||||    
T  42822994 tttgtagagtagctcttttggcacactttgtgctagaagagttgcttttggtgatttatataattccatttttgattgtt 42822915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 1844848 - 1844928
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    |||||| ||||| ||||||||||||||  |||||||| |||||||||||| ||||||||||  ||||||||||| ||||||    
T  1844848 tttgtagagtagctcttttggcacaccttgtgctagaggagttgtttttgatggttaatataaattccattttttattgtt 1844928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 12881275 - 12881355
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    |||||| ||||| |||||||| |||||  |||||||| |||||| ||||||||||||||||  |||||||| |||||||||    
T  12881275 tttgtagagtagctcttttggtacaccttgtgctagaggagttgcttttggtggttaatataaattccattgttgattgtt 12881355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 53779594 - 53779514
Alignment:
Q  6 ttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtg-gttaatat-tattccatttttgattgtt 84  Q
    |||||||||| |||||||||||||||  ||||||| ||||||| ||||||||  ||||||| |||| ||||||| ||||||    
T  53779594 ttgtaaagtaattcttttggcacaccttgtgctaggagagttgcttttggtgttttaatatatatttcattttttattgtt 53779514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 449601 - 449522
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    |||||| ||||| |||||||||||| |   |||| ||||||||| |||| ||| ||||||| ||||||||||| ||||||    
T  449601 tttgtagagtagctcttttggcacatcttatgctggaagagttgcttttcgtgattaatataattccattttttattgtt 449522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 53487543 - 53487622
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    |||||| |||| ||||||||||||| |  ||||||||||||||| |||| ||| || |||| ||||||||| | ||||||    
T  53487543 tttgtagagtaattcttttggcacatcttgtgctagaagagttgctttttgtgatttatataattccatttcttattgtt 53487622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 10563904 - 10563978
Alignment:
Q  11 aagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    ||||| ||||| |||||||||   ||||||  |||||| |||||||| ||||||| |||||||||||||||||||    
T  10563904 aagtaattcttctggcacaccttatgctaggggagttgcttttggtgtttaatatatattccatttttgattgtt 10563978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 29213571 - 29213651
Alignment:
Q  6 ttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtg-gttaatat-tattccatttttgattgtt 84  Q
    |||||||||| || ||||||||||||   | |||| ||||||| ||||||||  ||||||| |||||||||||||||||||    
T  29213571 ttgtaaagtaattattttggcacaccttatactaggagagttgcttttggtgttttaatatatattccatttttgattgtt 29213651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 24752972 - 24752890
Alignment:
Q  1 tgtatttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgt 83  Q
    |||||||||||||||||||||||||||||||  |||||| ||||| || |||||||||||||||| |||| ||||||||||||    
T  24752972 tgtatttgtaaagtagttcttttggcacaccttgtgctacaagagctgcttttggtggttaatataattctatttttgattgt 24752890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 20037590 - 20037670
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    |||||||||||||||||||||||||||   ||||||| |||||| |||||||||||||||| |||||||||||||||||||    
T  20037590 tttgtaaagtagttcttttggcacaccttatgctagaggagttgcttttggtggttaatatatattccatttttgattgtt 20037670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 18654423 - 18654503
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    |||||||||||||||||||||||||||  |||||||| |||||| |||||||||||||| | |||||||||||| ||||||    
T  18654423 tttgtaaagtagttcttttggcacaccttgtgctagaggagttgcttttggtggttaatttatattccattttttattgtt 18654503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 34231250 - 34231170
Alignment:
Q  4 atttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    ||||||| ||||| ||||||||||||||  |||| |||||||||| |||||||| ||||||| ||||||||||||||||||    
T  34231250 atttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatataattccatttttgattgtt 34231170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 20047721 - 20047801
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    |||||||| ||||||||||||||||||  || ||||| |||||| |||||||||||||||| |||||||||||| ||||||    
T  20047721 tttgtaaaatagttcttttggcacaccttgtactagaggagttgcttttggtggttaatatatattccattttttattgtt 20047801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 29114146 - 29114218
Alignment:
Q  12 agtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    ||||| ||||||||||||||  ||||||||| ||||| |||||||| ||||||| ||||||||||||||||||    
T  29114146 agtagctcttttggcacaccttgtgctagaatagttgcttttggtgattaatataattccatttttgattgtt 29114218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 7459266 - 7459340
Alignment:
Q  11 aagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    ||||| |||||||||||||||  |||||||  |||||| |||||||| ||||||| ||||||||||||| |||||    
T  7459266 aagtaattcttttggcacaccttgtgctaggggagttgcttttggtgtttaatatatattccatttttgtttgtt 7459340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 10282419 - 10282492
Alignment:
Q  12 agtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    |||| |||||||||||||    |||||||| ||||||||||| ||||||||||| ||||||||||||| |||||    
T  10282419 agtaattcttttggcacattttgtgctagaggagttgttttttgtggttaatatatattccatttttgcttgtt 10282492  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 46177804 - 46177725
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    ||||||||||| ||||||| |||||||   | ||||| |||||||||||||| | |||||| |||||||||||||||||||    
T  46177804 tttgtaaagtaattcttttagcacaccttatactagaggagttgtttttggt-gctaatatatattccatttttgattgtt 46177725  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 4076821 - 4076744
Alignment:
Q  9 taaagtagttcttttggcacacccagtgctagaagag-ttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    ||||||| |||||||||||||||  |||||||| ||| ||| |||||||| ||| ||| |||||||||||| ||||||    
T  4076821 taaagtaattcttttggcacaccttgtgctagaggagtttgcttttggtgattattatatattccattttttattgtt 4076744  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 10584004 - 10584084
Alignment:
Q  4 atttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    ||||||| ||||| ||||||||||||||  ||||||||||||||| |||||||| ||||||| ||| ||||||||||||||    
T  10584004 atttgtagagtagctcttttggcacaccttgtgctagaagagttgcttttggtgattaatataatttcatttttgattgtt 10584084  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 45256415 - 45256475
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat 65  Q
    ||||| |||||||||||||||||||||  |||||||| |||||||||||||||||||||||    
T  45256415 tttgtgaagtagttcttttggcacaccttgtgctagaggagttgtttttggtggttaatat 45256475  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 8446759 - 8446839
Alignment:
Q  4 atttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    ||||||| ||||| ||||| ||||||||  |||| |||||||||| ||||| || ||||||| ||||||||||||||||||    
T  8446759 atttgtagagtagctctttcggcacaccttgtgccagaagagttgcttttgatgattaatataattccatttttgattgtt 8446839  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 17658383 - 17658303
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    |||||||||||| ||||||||||||||  |||||| | ||| || |||||||||||||||| ||||||||||||| |||||    
T  17658383 tttgtaaagtagctcttttggcacaccttgtgctacaggagctgcttttggtggttaatatatattccatttttggttgtt 17658303  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 31082197 - 31082277
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    |||||| ||||| ||||||||||||||  |||||| |  ||||||||||||||||||||||  ||||||||||| ||||||    
T  31082197 tttgtagagtagctcttttggcacaccttgtgctacataagttgtttttggtggttaatataaattccattttttattgtt 31082277  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 10267652 - 10267576
Alignment:
Q  9 taaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    ||||||| ||| |||||||||||  |||||||| ||||| ||||||||| ||| ||| |||||||||||| ||||||    
T  10267652 taaagtaattcctttggcacaccttgtgctagaggagttatttttggtgattattatatattccattttttattgtt 10267576  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 26031038 - 26030965
Alignment:
Q  8 gtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgatt 81  Q
    |||||| | ||||||| |||||||  |||||||| |||||| |||||||| ||||||| ||||||||||||||||    
T  26031038 gtaaagcaattcttttagcacaccttgtgctagaggagttgcttttggtg-ttaatatatattccatttttgatt 26030965  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 29470786 - 29470866
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    |||||| ||||| ||||||||||||||   ||||| | ||| || |||||||||||||||| |||| ||||||| ||||||    
T  29470786 tttgtagagtagctcttttggcacaccttatgctacaggagctgcttttggtggttaatatatatttcattttttattgtt 29470866  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 3000337 - 3000417
Alignment:
Q  4 atttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    ||||||| ||||||||||||||||||||  |||| |||||||||| |||||||| ||||||| ||||||||||| ||||||    
T  3000337 atttgtagagtagttcttttggcacaccttgtgccagaagagttgcttttggtgattaatataattccattttttattgtt 3000417  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 9393087 - 9393007
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    ||||||||||| |||||||||||||||  |||||||| |||||| |||||||||||||||| |||| ||||||| ||||||    
T  9393087 tttgtaaagtatttcttttggcacaccttgtgctagaggagttgcttttggtggttaatatatatttcattttttattgtt 9393007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 7075655 - 7075583
Alignment:
Q  12 agtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    ||||| ||||||||||||||  ||||||||||||||| ||||| || ||||||| ||||||||||| ||||||    
T  7075655 agtagctcttttggcacaccttgtgctagaagagttgcttttgatgattaatataattccattttttattgtt 7075583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 22295919 - 22296000
Alignment:
Q  4 atttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    ||||||||||||||||||||||||||||  ||| |||| || ||| ||||  |||||||||| |||| ||||||||||||||    
T  22295919 atttgtaaagtagttcttttggcacaccttgtgttagaggaattgcttttaatggttaatatatatttcatttttgattgtt 22296000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 18704391 - 18704464
Alignment:
Q  12 agtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    |||| ||||||||||||| |  |||||||| |||||| ||||| |||||||||| |||||||||||| ||||||    
T  18704391 agtaattcttttggcacatcttgtgctagacgagttgcttttgatggttaatatatattccattttttattgtt 18704464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 1379614 - 1379570
Alignment:
Q  40 gaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    ||||||||| |||||||| ||||||| ||||||||||||||||||    
T  1379614 gaagagttgcttttggtgattaatataattccatttttgattgtt 1379570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 24314014 - 24314086
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccattttt 77  Q
    ||||||||||| ||| ||| |||||||  |||||||| |||||| ||||||| |||||||| ||||||||||||    
T  24314014 tttgtaaagtaattcgtttagcacaccttgtgctagaggagttgcttttggt-gttaatatatattccattttt 24314086  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 6048787 - 6048707
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    |||||| ||||||||||||||||||||   ||||||| |||||| |||||||||||||||| |||||||||||| ||||||    
T  6048787 tttgtagagtagttcttttggcacaccttatgctagaggagttgcttttggtggttaatatatattccattttttattgtt 6048707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 27895442 - 27895376
Alignment:
Q  18 tcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    ||||||||||||||  |||| | |||||||| |||||||||||||||| ||||||||||||||||||    
T  27895442 tcttttggcacaccttgtgccaaaagagttgcttttggtggttaatataattccatttttgattgtt 27895376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 20209310 - 20209389
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    ||||||||||| ||||||| |||||||  |||||||| |||||| ||||||| |||||||| |||||||||||||||||||    
T  20209310 tttgtaaagtaattcttttagcacaccttgtgctagaggagttgcttttggt-gttaatatatattccatttttgattgtt 20209389  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 4416290 - 4416369
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    |||||| ||||| ||||||| ||||||  ||||||||||||||| |||||||| || |||| ||||||||||| ||||||    
T  4416290 tttgtagagtagctcttttgacacaccttgtgctagaagagttgcttttggtgatttatataattccattttttattgtt 4416369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 4922784 - 4922705
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    ||||||||||| ||||||| |||||||   ||||||| |||||| ||||||| |||||||| |||||||||||||||||||    
T  4922784 tttgtaaagtaattcttttagcacaccttatgctagaggagttgcttttggt-gttaatatatattccatttttgattgtt 4922705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 34875027 - 34875107
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    |||||| ||||| ||||||||||||||  |||||| |  || || ||||||||||||||||  ||||||||||||||||||    
T  34875027 tttgtagagtagctcttttggcacaccttgtgctacagaagctgcttttggtggttaatataaattccatttttgattgtt 34875107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 8892046 - 8891966
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    |||||| ||||| ||||||||||| ||  |||||| | ||| || |||||||||||||||| ||| |||||||| ||||||    
T  8892046 tttgtagagtagctcttttggcacgccttgtgctataggagctgcttttggtggttaatatatatcccattttttattgtt 8891966  T

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Target: scaffold0227 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 8380 - 8457
Alignment:
Q  7 tgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    |||| |||||||||| ||||||  |  ||||||||||||||| |||||||||||||||| |||||||||||| |||||    
T  8380 tgtatagtagttcttgtggcacgtcttgtgctagaagagttgcttttggtggttaatataattccatttttgtttgtt 8457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 1416 - 1344
Alignment:
Q  12 agtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    ||||||||||| ||||||||  |||||| ||||||||||||| ||| ||||||| ||||||||||| ||||||    
T  1416 agtagttctttcggcacaccttgtgctaaaagagttgtttttagtgattaatataattccattttttattgtt 1344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 11630 - 11550
Alignment:
Q  5 tttgtaaagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatat-tattccatttttgattgtt 84  Q
    |||||| ||||| ||||||||||| ||  |||||| | ||| || |||||||||||||||| ||| |||||||||||||||    
T  11630 tttgtagagtagctcttttggcacgccttgtgctataggagctgcttttggtggttaatatatatcccatttttgattgtt 11550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0765 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 1382 - 1455
Alignment:
Q  11 aagtagttcttttggcacacccagtgctagaagagttgtttttggtggttaatattattccatttttgattgtt 84  Q
    ||||| ||||| |||||||||  ||||||| ||||||| |||||||  |||||||  ||||||||||| |||||    
T  1382 aagtaattcttctggcacaccttgtgctaggagagttgcttttggtatttaatatatttccatttttgtttgtt 1455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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