View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10338_low_12 (Length: 226)

Name: NF10338_low_12
Description: NF10338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10338_low_12
NF10338_low_12
[»] chr3 (14 HSPs)
chr3 (37-171)||(41946813-41946941)
chr3 (171-226)||(47537199-47537254)
chr3 (171-226)||(19222056-19222110)
chr3 (171-226)||(26845802-26845857)
chr3 (171-226)||(33121471-33121526)
chr3 (41-87)||(54377889-54377934)
chr3 (25-85)||(33756884-33756944)
chr3 (25-87)||(25746292-25746354)
chr3 (25-86)||(22603980-22604040)
chr3 (173-222)||(50544156-50544205)
chr3 (26-81)||(50093126-50093180)
chr3 (128-167)||(54378023-54378062)
chr3 (41-87)||(11559346-11559391)
chr3 (41-87)||(11568615-11568660)
[»] chr8 (15 HSPs)
chr8 (171-226)||(23680093-23680148)
chr8 (171-226)||(45255982-45256037)
chr8 (170-225)||(17658763-17658818)
chr8 (38-85)||(2751999-2752045)
chr8 (128-171)||(13322702-13322745)
chr8 (171-226)||(26031423-26031478)
chr8 (25-86)||(4974928-4974988)
chr8 (25-85)||(9293316-9293375)
chr8 (123-167)||(9293467-9293511)
chr8 (133-170)||(20990559-20990596)
chr8 (46-87)||(25381101-25381142)
chr8 (35-87)||(20990357-20990408)
chr8 (34-85)||(13275906-13275957)
chr8 (41-88)||(13322830-13322877)
chr8 (128-170)||(25380965-25381008)
[»] chr4 (16 HSPs)
chr4 (171-226)||(20395527-20395582)
chr4 (171-226)||(53779976-53780031)
chr4 (29-87)||(9592064-9592122)
chr4 (171-226)||(29213135-29213190)
chr4 (171-226)||(30273966-30274021)
chr4 (171-226)||(34322473-34322528)
chr4 (41-85)||(17028505-17028549)
chr4 (171-226)||(18106710-18106765)
chr4 (171-226)||(42778169-42778224)
chr4 (171-226)||(53487107-53487162)
chr4 (44-82)||(56490553-56490591)
chr4 (177-226)||(10563469-10563518)
chr4 (171-210)||(461853-461892)
chr4 (128-171)||(9591933-9591975)
chr4 (36-87)||(22434128-22434178)
chr4 (132-168)||(22434012-22434048)
[»] chr1 (16 HSPs)
chr1 (27-87)||(33372763-33372822)
chr1 (171-226)||(10711315-10711370)
chr1 (171-226)||(17707927-17707982)
chr1 (171-223)||(47106834-47106886)
chr1 (171-226)||(41061298-41061353)
chr1 (128-170)||(28007207-28007249)
chr1 (25-86)||(25878304-25878364)
chr1 (182-226)||(26720630-26720674)
chr1 (28-87)||(10918202-10918260)
chr1 (172-226)||(30111080-30111134)
chr1 (128-171)||(45438507-45438550)
chr1 (128-170)||(10918070-10918112)
chr1 (35-85)||(28007066-28007115)
chr1 (32-85)||(32992083-32992136)
chr1 (44-85)||(45438641-45438682)
chr1 (25-84)||(30937240-30937302)
[»] scaffold0007 (1 HSPs)
scaffold0007 (171-226)||(182060-182115)
[»] chr5 (16 HSPs)
chr5 (171-226)||(4923165-4923220)
chr5 (25-87)||(26708902-26708963)
chr5 (25-87)||(26978636-26978697)
chr5 (25-87)||(29068964-29069025)
chr5 (171-226)||(6049154-6049209)
chr5 (25-85)||(7031197-7031258)
chr5 (171-226)||(7000919-7000974)
chr5 (25-87)||(37192856-37192917)
chr5 (128-170)||(41249902-41249944)
chr5 (170-222)||(34874596-34874648)
chr5 (171-226)||(4415854-4415909)
chr5 (171-222)||(20208873-20208924)
chr5 (44-85)||(8162623-8162664)
chr5 (132-171)||(7031325-7031364)
chr5 (128-168)||(26708772-26708812)
chr5 (128-168)||(26978506-26978546)
[»] chr2 (10 HSPs)
chr2 (41-88)||(17353687-17353734)
chr2 (25-88)||(41342184-41342247)
chr2 (171-226)||(1380013-1380068)
chr2 (171-226)||(2999902-2999957)
chr2 (25-86)||(30870665-30870725)
chr2 (25-85)||(8910381-8910440)
chr2 (132-170)||(29454051-29454089)
chr2 (45-82)||(21430989-21431026)
chr2 (132-171)||(19033759-19033798)
chr2 (128-170)||(26353932-26353974)
[»] chr6 (7 HSPs)
chr6 (171-225)||(11061013-11061067)
chr6 (35-88)||(291971-292024)
chr6 (122-171)||(292106-292155)
chr6 (171-226)||(9199406-9199461)
chr6 (25-85)||(11082800-11082860)
chr6 (171-226)||(17079345-17079400)
chr6 (171-212)||(17873972-17874013)
[»] chr7 (8 HSPs)
chr7 (177-226)||(7458831-7458880)
chr7 (41-85)||(23428635-23428679)
chr7 (171-226)||(34231630-34231685)
chr7 (171-226)||(29113703-29113758)
chr7 (41-85)||(8544105-8544148)
chr7 (41-88)||(42594046-42594093)
chr7 (128-170)||(8544020-8544062)
chr7 (171-215)||(4077217-4077261)
[»] scaffold0179 (1 HSPs)
scaffold0179 (171-226)||(7459-7514)
[»] scaffold0092 (2 HSPs)
scaffold0092 (41-87)||(53337-53382)
scaffold0092 (128-170)||(53738-53780)


Alignment Details
Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 37 - 171
Target Start/End: Complemental strand, 41946941 - 41946813
Alignment:
Q  37 aaaatttaataagtggggtcaaagttatatcataaaaatttatataaaactaaacgtgtaagcgtttagttttatatataagttatgtttatagcagagt 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||    
T  41946941 aaaatttaataagtggggtcaaagttatatcataaaaatttatataaaactaaacg------cgtttagttttatatataagttatgtttatagcagagt 41946848  T
Q  137 ataaaaaagataaccataattaattattttttcaa 171  Q
    |||||||||||||||||||||||||||||||||||    
T  41946847 ataaaaaagataaccataattaattattttttcaa 41946813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 47537254 - 47537199
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47537254 aagcttctatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgttt 47537199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 19222110 - 19222056
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  19222110 aagcttctatgtgtgtttcagattgtgccatgagtgaaacggcgc-acatttgttt 19222056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 26845857 - 26845802
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    ||||||| ||||||||| ||| |||||||||||| |||||||||||||||||||||    
T  26845857 aagcttcgatgtgtgtttcagtttgtggcatgagagaaacggcgcaacatttgttt 26845802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 33121471 - 33121526
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    |||||||| |||||||  |||||||||||||||||||||| |||||||||||||||    
T  33121471 aagcttctttgtgtgtctcagattgtggcatgagtgaaacagcgcaacatttgttt 33121526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 54377889 - 54377934
Alignment:
Q  41 tttaataagtggggtcaaagttatatcataaaaatttatataaaact 87  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  54377889 tttaataagtggggtcaa-gttatatcataaaaatttatataaaact 54377934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 33756884 - 33756944
Alignment:
Q  25 tgacggatctaaaaaatttaataagtggggtcaaagttatatcataaaaatttatataaaa 85  Q
    |||| |||| |||||||||||||| |||| ||||  |||||||||||||||||||||||||    
T  33756884 tgacagatccaaaaaatttaataaatgggatcaatattatatcataaaaatttatataaaa 33756944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 25746354 - 25746292
Alignment:
Q  25 tgacggatctaaaaaatttaataagtggggtcaaagttatatcataaaaatttatataaaact 87  Q
    ||||||||| ||||| ||||||||||| | | |||||||||| ||||||||||||| ||||||    
T  25746354 tgacggatccaaaaattttaataagtgagattaaagttatattataaaaatttatacaaaact 25746292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 22603980 - 22604040
Alignment:
Q  25 tgacggatctaaaaaatttaataagtggggtcaaagttatatcataaaaatttatataaaac 86  Q
    ||||||||| | ||| ||| ||||||| |||||| |||||||||||||||||||||||||||    
T  22603980 tgacggatccagaaattttgataagtgaggtcaa-gttatatcataaaaatttatataaaac 22604040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 50544205 - 50544156
Alignment:
Q  173 gcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacattt 222  Q
    ||||||||||||||| ||||||||||| |  |||||||||||||||||||    
T  50544205 gcttctatgtgtgtttcagattgtggcttttgtgaaacggcgcaacattt 50544156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 50093126 - 50093180
Alignment:
Q  26 gacggatctaaaaaatttaataagtggggtcaaagttatatcataaaaatttatat 81  Q
    |||| ||||| ||| |||||||| |||||||||| |||||||||||||||||||||    
T  50093126 gacgaatctagaaattttaataaatggggtcaaa-ttatatcataaaaatttatat 50093180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 167
Target Start/End: Original strand, 54378023 - 54378062
Alignment:
Q  128 tagcagagtataaaaaagataaccataattaattattttt 167  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  54378023 tagcggagtataaaaaatataaccataattaattattttt 54378062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 11559346 - 11559391
Alignment:
Q  41 tttaataagtggggtcaaagttatatcataaaaatttatataaaact 87  Q
    |||||||||||  ||||| ||||||||||||||||||||||||||||    
T  11559346 tttaataagtgcagtcaa-gttatatcataaaaatttatataaaact 11559391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 11568615 - 11568660
Alignment:
Q  41 tttaataagtggggtcaaagttatatcataaaaatttatataaaact 87  Q
    |||||||||||  ||||| ||||||||||||||||||||||||||||    
T  11568615 tttaataagtgcagtcaa-gttatatcataaaaatttatataaaact 11568660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 23680148 - 23680093
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23680148 aagcttctatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgttt 23680093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 45255982 - 45256037
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  45255982 aagcttctttgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgttt 45256037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 17658818 - 17658763
Alignment:
Q  170 aaagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgtt 225  Q
    |||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||    
T  17658818 aaagcttccatgtgtgtttcagattgtggcataagtgaaacggcgcaacatttgtt 17658763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 2752045 - 2751999
Alignment:
Q  38 aaatttaataagtggggtcaaagttatatcataaaaatttatataaaa 85  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2752045 aaatttaataagtggggtcaa-gttatatcataaaaatttatataaaa 2751999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 13322745 - 13322702
Alignment:
Q  128 tagcagagtataaaaaagataaccataattaattattttttcaa 171  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  13322745 tagcagagtataaaaaatataaccataattaattattttttcaa 13322702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 26031478 - 26031423
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    ||||||| ||||||||| | |||||||||||||| |||||||||||||||||||||    
T  26031478 aagcttcgatgtgtgtttctgattgtggcatgagagaaacggcgcaacatttgttt 26031423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 4974928 - 4974988
Alignment:
Q  25 tgacggatctaaaaaatttaataagtggggtcaaagttatatcataaaaatttatataaaac 86  Q
    ||||||||| | ||| ||| |||||||||||||| |||||||||||||||||||||||||||    
T  4974928 tgacggatccagaaattttgataagtggggtcaa-gttatatcataaaaatttatataaaac 4974988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 9293316 - 9293375
Alignment:
Q  25 tgacggatctaaaaaatttaataagtggggtcaaagttatatcataaaaatttatataaaa 85  Q
    ||||||||| ||||| ||||||||| | |||||| ||||||||||||||||||||||||||    
T  9293316 tgacggatccaaaaattttaataagggaggtcaa-gttatatcataaaaatttatataaaa 9293375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 9293467 - 9293511
Alignment:
Q  123 gtttatagcagagtataaaaaagataaccataattaattattttt 167  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||    
T  9293467 gtttctagcagagtataaaaaatataaccataattaattattttt 9293511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 20990559 - 20990596
Alignment:
Q  133 gagtataaaaaagataaccataattaattattttttca 170  Q
    |||||||||||| |||||||||||||||||||||||||    
T  20990559 gagtataaaaaatataaccataattaattattttttca 20990596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 25381142 - 25381101
Alignment:
Q  46 taagtggggtcaaagttatatcataaaaatttatataaaact 87  Q
    |||||| |||||||||||||| ||||||||||||||||||||    
T  25381142 taagtgtggtcaaagttatattataaaaatttatataaaact 25381101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 20990357 - 20990408
Alignment:
Q  35 aaaaaatttaataagtggggtcaaagttatatcataaaaatttatataaaact 87  Q
    ||||| ||| ||||||||||| || ||||||||||||||||||||||||||||    
T  20990357 aaaaactttgataagtggggttaa-gttatatcataaaaatttatataaaact 20990408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 13275957 - 13275906
Alignment:
Q  34 taaaaaatttaataagtggggtcaaagttatatcataaaaatttatataaaa 85  Q
    |||||| |||||||||| ||||||| || |||||||| ||||||||||||||    
T  13275957 taaaaattttaataagttgggtcaatgtcatatcatagaaatttatataaaa 13275906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 13322877 - 13322830
Alignment:
Q  41 tttaataagtggggtcaaagttatatcataaaaatttatataaaacta 88  Q
    ||||||||||  |||||||||||| |||||||||| ||||||||||||    
T  13322877 tttaataagtttggtcaaagttatctcataaaaatgtatataaaacta 13322830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 25381008 - 25380965
Alignment:
Q  128 tagcagagtataaa-aaagataaccataattaattattttttca 170  Q
    |||||||||||||| ||| |||||||||||||||||||||||||    
T  25381008 tagcagagtataaagaaatataaccataattaattattttttca 25380965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 20395582 - 20395527
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20395582 aagcttctatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgttt 20395527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 53780031 - 53779976
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  53780031 aagctgctatgtgtgttacggattgtggcatgagtgaaacggcgcaacatttgttt 53779976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 9592122 - 9592064
Alignment:
Q  29 ggatctaaaaaatttaataagtggggtcaaagttatatcataaaaatttatataaaact 87  Q
    ||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  9592122 ggatccaaaaattttaataagtggggtcaaaattatatcataaaaatttatataaaact 9592064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 29213135 - 29213190
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    ||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  29213135 aagctgctatgtgtgttacggattctggcatgagtgaaacggcgcaacatttgttt 29213190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 30273966 - 30274021
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    |||||||| |||||||| |||||||||||||||||||||| |||||||||||||||    
T  30273966 aagcttctttgtgtgtttcagattgtggcatgagtgaaacagcgcaacatttgttt 30274021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 34322473 - 34322528
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    |||||||| |||||||| |||||||||||||||||||||| |||||||||||||||    
T  34322473 aagcttctctgtgtgtttcagattgtggcatgagtgaaacagcgcaacatttgttt 34322528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 17028549 - 17028505
Alignment:
Q  41 tttaataagtggggtcaaagttatatcataaaaatttatataaaa 85  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  17028549 tttaataagtgggatcaaagttatatcataaaaatttatataaaa 17028505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 18106710 - 18106765
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    |||||||| |||||||| |||||||||||||||||||||| ||||||| |||||||    
T  18106710 aagcttctttgtgtgtttcagattgtggcatgagtgaaacagcgcaacgtttgttt 18106765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 42778224 - 42778169
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    |||||||  |||||||| |||||||||||||||||||||| |||||||||||||||    
T  42778224 aagcttcattgtgtgtttcagattgtggcatgagtgaaacagcgcaacatttgttt 42778169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 53487107 - 53487162
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    |||||||| |||||||| | |||||||||||| |||||||||||||||||||||||    
T  53487107 aagcttctttgtgtgtttctgattgtggcatgtgtgaaacggcgcaacatttgttt 53487162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 56490553 - 56490591
Alignment:
Q  44 aataagtggggtcaaagttatatcataaaaatttatata 82  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  56490553 aataagtggagtcaaagttatatcataaaaatttatata 56490591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 10563469 - 10563518
Alignment:
Q  177 ctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    ||||||||||||| ||||||||||||||||||||| || | |||||||||    
T  10563469 ctatgtgtgttacggattgtggcatgagtgaaacgacgtagcatttgttt 10563518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 461892 - 461853
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaac 210  Q
    |||||||| |||||||| ||||||||||||||||||||||    
T  461892 aagcttctttgtgtgtttcagattgtggcatgagtgaaac 461853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 9591975 - 9591933
Alignment:
Q  128 tagcagagtataaaaaagataaccataattaattattttttcaa 171  Q
    |||||||||| |||||| ||||||||||||||||||||||||||    
T  9591975 tagcagagta-aaaaaatataaccataattaattattttttcaa 9591933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 22434178 - 22434128
Alignment:
Q  36 aaaaatttaataagtggggtcaaagttatatcataaaaatttatataaaact 87  Q
    ||||||||||||| ||||||||| ||| || |||||||||||||||||||||    
T  22434178 aaaaatttaataaatggggtcaa-gttgtaccataaaaatttatataaaact 22434128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 22434048 - 22434012
Alignment:
Q  132 agagtataaaaaagataaccataattaattatttttt 168  Q
    |||||||||||||  ||||||||||||||||||||||    
T  22434048 agagtataaaaaatgtaaccataattaattatttttt 22434012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 33372822 - 33372763
Alignment:
Q  27 acggatctaaaaaatttaataagtggggtcaaagttatatcataaaaatttatataaaact 87  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  33372822 acggatctaaaaattttaataagtggggtcaa-gttatatcataaaaatttatataaaact 33372763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 10711315 - 10711370
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10711315 aagcttccatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgttt 10711370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 17707982 - 17707927
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    |||||||| |||||||| |||||||||||||||||||||| |||||||||||||||    
T  17707982 aagcttctttgtgtgtttcagattgtggcatgagtgaaacagcgcaacatttgttt 17707927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 47106834 - 47106886
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttg 223  Q
    |||||||| |||||||| || ||||||||||||||||||||||||||||||||    
T  47106834 aagcttctttgtgtgtttcaaattgtggcatgagtgaaacggcgcaacatttg 47106886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 41061298 - 41061353
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    ||||||| ||||||||| ||| |||||||||||| |||||||||||||||||||||    
T  41061298 aagcttcgatgtgtgtttcagtttgtggcatgagagaaacggcgcaacatttgttt 41061353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 28007207 - 28007249
Alignment:
Q  128 tagcagagtataaaaaagataaccataattaattattttttca 170  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  28007207 tagcagagtataaaaaatataaccataattaattattttttca 28007249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 25878304 - 25878364
Alignment:
Q  25 tgacggatctaaaaaatttaataagtggggtcaaagttatatcataaaaatttatataaaac 86  Q
    ||||||||| | ||| ||| |||||||||||||| |||||||||||||||||||||||||||    
T  25878304 tgacggatccagaaattttgataagtggggtcaa-gttatatcataaaaatttatataaaac 25878364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 26720674 - 26720630
Alignment:
Q  182 tgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    |||||| |||||||||||||||| |||||||||||||||||||||    
T  26720674 tgtgtttcagattgtggcatgagagaaacggcgcaacatttgttt 26720630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 10918260 - 10918202
Alignment:
Q  28 cggatctaaaaaatttaataagtggggtcaaagttatatcataaaaatttatataaaact 87  Q
    |||||| | ||| |||||||||||||||||| |||||||||| |||||||||||||||||    
T  10918260 cggatccagaaattttaataagtggggtcaa-gttatatcatgaaaatttatataaaact 10918202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 30111080 - 30111134
Alignment:
Q  172 agcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    ||||||| |||||||| |||| ||||||||| |||||| ||||||||||||||||    
T  30111080 agcttctttgtgtgtttcagactgtggcatgtgtgaaaaggcgcaacatttgttt 30111134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 45438550 - 45438507
Alignment:
Q  128 tagcagagtataaaaaagataaccataattaattattttttcaa 171  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||    
T  45438550 tagcatagtataaaaaatataaacataattaattattttttcaa 45438507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 10918112 - 10918070
Alignment:
Q  128 tagcagagtataaaaaagataaccataattaattattttttca 170  Q
    |||| |||||||||||| |||||| ||||||||||||||||||    
T  10918112 tagcggagtataaaaaatataaccttaattaattattttttca 10918070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 28007066 - 28007115
Alignment:
Q  35 aaaaaatttaataagtggggtcaaagttatatcataaaaatttatataaaa 85  Q
    ||||| ||||||||||| |||||| |||||||||||||||| |||||||||    
T  28007066 aaaaattttaataagtgaggtcaa-gttatatcataaaaatatatataaaa 28007115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 32992136 - 32992083
Alignment:
Q  32 tctaaaaaatttaataagtggggtcaaagttatatcataaaaatttatataaaa 85  Q
    |||| ||| |||||||  |||| | |||||||||||||||||||||||||||||    
T  32992136 tctagaaattttaatagatgggattaaagttatatcataaaaatttatataaaa 32992083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 45438682 - 45438641
Alignment:
Q  44 aataagtggggtcaaagttatatcataaaaatttatataaaa 85  Q
    |||||||| ||||||||||||||||||||| ||||| |||||    
T  45438682 aataagtgaggtcaaagttatatcataaaattttatttaaaa 45438641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 30937302 - 30937240
Alignment:
Q  25 tgacggatctaaaaaatttaataagtgg---ggtcaaagttatatcataaaaatttatataaa 84  Q
    ||||||||| | ||| ||||||||||||   |||||||||||||||||||||| |||| ||||    
T  30937302 tgacggatccataaattttaataagtggtggggtcaaagttatatcataaaaacttatgtaaa 30937240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 182115 - 182060
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  182115 aagcttctatgtgtgttacagattgtggcatgaatgaaacagcgcaacatttgttt 182060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 4923220 - 4923165
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4923220 aagcttcgatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgttt 4923165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 26708963 - 26708902
Alignment:
Q  25 tgacggatctaaaaaatttaataagtggggtcaaagttatatcataaaaatttatataaaact 87  Q
    ||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  26708963 tgacggatccaaaaattttaataagtggggtcaa-gttatatcataaaaatttatataaaact 26708902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 26978697 - 26978636
Alignment:
Q  25 tgacggatctaaaaaatttaataagtggggtcaaagttatatcataaaaatttatataaaact 87  Q
    ||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  26978697 tgacggatccaaaaattttaataagtggggtcaa-gttatatcataaaaatttatataaaact 26978636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 29068964 - 29069025
Alignment:
Q  25 tgacggatctaaaaaatttaataagtggggtcaaagttatatcataaaaatttatataaaact 87  Q
    ||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  29068964 tgacggatccaaaaaatttaataagtggggtc-aacttatatcataaaaatttatataaaact 29069025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 6049209 - 6049154
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    |||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||    
T  6049209 aagcttctttgtgtgtttcagattgtggcatgagtgaaacggcacaacatttgttt 6049154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 7031197 - 7031258
Alignment:
Q  25 tgacggatctaaaaaatttaataagt-ggggtcaaagttatatcataaaaatttatataaaa 85  Q
    ||||||||| |||||| || |||||| |||||||||||||||||||||||||||||||||||    
T  7031197 tgacggatccaaaaaaattgataagtaggggtcaaagttatatcataaaaatttatataaaa 7031258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 7000919 - 7000974
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    |||||||| |||||||| ||||||||||||||||||||||||  ||||||||||||    
T  7000919 aagcttctctgtgtgtttcagattgtggcatgagtgaaacggtacaacatttgttt 7000974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 37192856 - 37192917
Alignment:
Q  25 tgacggatctaaaaaatttaataagtggggtcaaagttatatcataaaaatttatataaaact 87  Q
    ||||||||| | ||| ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  37192856 tgacggatccataaattttaataagtgaggtcaa-gttatatcataaaaatttatataaaact 37192917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 41249944 - 41249902
Alignment:
Q  128 tagcagagtataaaaaagataaccataattaattattttttca 170  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  41249944 tagcagagtataaaaaatataaccataattaattattttttca 41249902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 34874596 - 34874648
Alignment:
Q  170 aaagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacattt 222  Q
    ||||||||||||||||||  ||||||| || ||||||||||||||||||||||    
T  34874596 aaagcttctatgtgtgttttagattgtcgcttgagtgaaacggcgcaacattt 34874648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 4415854 - 4415909
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    |||||||| |||||||| ||||||||||||| ||||||||  ||||||||||||||    
T  4415854 aagcttctctgtgtgtttcagattgtggcattagtgaaacaacgcaacatttgttt 4415909  T

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Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 20208873 - 20208924
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacattt 222  Q
    |||||||  |||||||| |||||||||||||||| |||||||||||||||||    
T  20208873 aagcttcgttgtgtgtttcagattgtggcatgagagaaacggcgcaacattt 20208924  T

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Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 8162623 - 8162664
Alignment:
Q  44 aataagtggggtcaaagttatatcataaaaatttatataaaa 85  Q
    ||||| || |||||||||||||||||||||||||||||||||    
T  8162623 aataaatgaggtcaaagttatatcataaaaatttatataaaa 8162664  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 7031325 - 7031364
Alignment:
Q  132 agagtataaaaaagataaccataattaattattttttcaa 171  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  7031325 agagtataaaaaatataaccttaattaattattttttcaa 7031364  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 26708812 - 26708772
Alignment:
Q  128 tagcagagtataaaaaagataaccataattaattatttttt 168  Q
    |||||||| |||||||| |||| ||||||||||||||||||    
T  26708812 tagcagagaataaaaaatataatcataattaattatttttt 26708772  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 26978546 - 26978506
Alignment:
Q  128 tagcagagtataaaaaagataaccataattaattatttttt 168  Q
    |||||||| |||||||| |||| ||||||||||||||||||    
T  26978546 tagcagagaataaaaaatataatcataattaattatttttt 26978506  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 17353687 - 17353734
Alignment:
Q  41 tttaataagtggggtcaaagttatatcataaaaatttatataaaacta 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17353687 tttaataagtggggtcaaagttatatcataaaaatttatataaaacta 17353734  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 41342247 - 41342184
Alignment:
Q  25 tgacggatctaaaaaatttaataagtggggtcaaagttatatcataaaaatttatataaaacta 88  Q
    ||||| ||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  41342247 tgacgaatccaaaaaatttaataactgaggtcaaagttatatcataaaaatttatataaaacta 41342184  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 1380068 - 1380013
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    |||||||  |||||||| ||||||||||||||||||||||||||||||||||||||    
T  1380068 aagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgttt 1380013  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 2999902 - 2999957
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    |||||||| |||||||| |||||||||||||||||||||| ||||||| |||||||    
T  2999902 aagcttctttgtgtgtttcagattgtggcatgagtgaaacagcgcaacgtttgttt 2999957  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 30870725 - 30870665
Alignment:
Q  25 tgacggatctaaaaaatttaataagtggggtcaaagttatatcataaaaatttatataaaac 86  Q
    ||||||||| | ||| ||| |||||||||||||| |||||||||||||||||||||||||||    
T  30870725 tgacggatccagaaattttgataagtggggtcaa-gttatatcataaaaatttatataaaac 30870665  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 8910440 - 8910381
Alignment:
Q  25 tgacggatctaaaaaatttaataagtggggtcaaagttatatcataaaaatttatataaaa 85  Q
    ||||||||| ||||| ||||||||||||||| || ||||||||||||||| ||||||||||    
T  8910440 tgacggatccaaaaattttaataagtggggttaa-gttatatcataaaaaattatataaaa 8910381  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 29454051 - 29454089
Alignment:
Q  132 agagtataaaaaagataaccataattaattattttttca 170  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  29454051 agagtataaaaaatataaccataattaattattttttca 29454089  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 21431026 - 21430989
Alignment:
Q  45 ataagtggggtcaaagttatatcataaaaatttatata 82  Q
    |||||||| |||||||||||||||||||||||||||||    
T  21431026 ataagtggagtcaaagttatatcataaaaatttatata 21430989  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 19033759 - 19033798
Alignment:
Q  132 agagtataaaaaagataaccataattaattattttttcaa 171  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  19033759 agagtataaaaaatagaaccataattaattattttttcaa 19033798  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 26353974 - 26353932
Alignment:
Q  128 tagcagagtataaaaaagataaccataattaattattttttca 170  Q
    |||||||||||||| || |||||||||| ||||||||||||||    
T  26353974 tagcagagtataaacaatataaccataaataattattttttca 26353932  T

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Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 11061013 - 11061067
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgtt 225  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  11061013 aagcttccatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtt 11061067  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 291971 - 292024
Alignment:
Q  35 aaaaaatttaataagtggggtcaaagttatatcataaaaatttatataaaacta 88  Q
    ||||| ||||||||||  ||||||||||||||||||||||||||||||||||||    
T  291971 aaaaattttaataagtaaggtcaaagttatatcataaaaatttatataaaacta 292024  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 292106 - 292155
Alignment:
Q  122 tgtttatagcagagtataaaaaagataaccataattaattattttttcaa 171  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  292106 tgtttctagcagagtataaaaaatataaccataattaattattttttcaa 292155  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 9199406 - 9199461
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    |||||||  |||||||| ||||||||||||||||||||| ||||||||||||||||    
T  9199406 aagcttcattgtgtgtttcagattgtggcatgagtgaaatggcgcaacatttgttt 9199461  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 11082800 - 11082860
Alignment:
Q  25 tgacggatctaaaaaatttaataagtggggtcaaagttatatcataaaaatttatataaaa 85  Q
    ||||||||| | ||| ||||||||||| |||| || |||||||||||||||||||||||||    
T  11082800 tgacggatccagaaattttaataagtgaggtcgaatttatatcataaaaatttatataaaa 11082860  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 17079345 - 17079400
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    |||||||||||| |||| ||| |||||||||||||||| |||||| ||||||||||    
T  17079345 aagcttctatgtatgtttcaggttgtggcatgagtgaatcggcgcgacatttgttt 17079400  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 17873972 - 17874013
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacgg 212  Q
    ||||| |||| |||||||| ||||||||||||||||||||||    
T  17873972 aagctgctatatgtgttacggattgtggcatgagtgaaacgg 17874013  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 7458831 - 7458880
Alignment:
Q  177 ctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7458831 ctatgtgtgttacagattgtggcatgagcgaaacggcgcaacatttgttt 7458880  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 23428635 - 23428679
Alignment:
Q  41 tttaataagtggggtcaaagttatatcataaaaatttatataaaa 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  23428635 tttaataagtggggtcaaagttatatcataaaaatttatataaaa 23428679  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 34231685 - 34231630
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    |||||||| |||||||| |||||||||||||||||||||| |||||||||||||||    
T  34231685 aagcttctttgtgtgtttcagattgtggcatgagtgaaacagcgcaacatttgttt 34231630  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 29113703 - 29113758
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    |||||||| ||||||||  ||||||||||||||||||||| |||||||||||||||    
T  29113703 aagcttctttgtgtgttttagattgtggcatgagtgaaacagcgcaacatttgttt 29113758  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 8544148 - 8544105
Alignment:
Q  41 tttaataagtggggtcaaagttatatcataaaaatttatataaaa 85  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  8544148 tttaataagtggggtcaa-gttatatcataaaaatttatataaaa 8544105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 42594046 - 42594093
Alignment:
Q  41 tttaataagtggggtcaaagttatatcataaaaatttatataaaacta 88  Q
    |||||||||| |||||||||||||| |||||| |||||||||||||||    
T  42594046 tttaataagtagggtcaaagttataccataaagatttatataaaacta 42594093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 8544062 - 8544020
Alignment:
Q  128 tagcagagtataaaaaagataaccataattaattattttttca 170  Q
    ||||||||||||||||| ||||||||||| |||||||||||||    
T  8544062 tagcagagtataaaaaatataaccataatcaattattttttca 8544020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 4077261 - 4077217
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgc 215  Q
    ||||||||||||||||| ||||||||||| |  ||||||||||||    
T  4077261 aagcttctatgtgtgtttcagattgtggcttttgtgaaacggcgc 4077217  T

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Target: scaffold0179 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 7514 - 7459
Alignment:
Q  171 aagcttctatgtgtgttacagattgtggcatgagtgaaacggcgcaacatttgttt 226  Q
    ||||||| ||||||||| ||| |||||||||||| |||||||||||||||||||||    
T  7514 aagcttcgatgtgtgtttcagtttgtggcatgagagaaacggcgcaacatttgttt 7459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 53337 - 53382
Alignment:
Q  41 tttaataagtggggtcaaagttatatcataaaaatttatataaaact 87  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  53337 tttaataagtgaggtcaa-gttatatcataaaaatttatataaaact 53382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 53738 - 53780
Alignment:
Q  128 tagcagagtataaaaaagataaccataattaattattttttca 170  Q
    ||||| ||||||||||| |||| ||||||||||||||||||||    
T  53738 tagcaaagtataaaaaatataatcataattaattattttttca 53780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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