View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10338_low_2 (Length: 515)
Name: NF10338_low_2
Description: NF10338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10338_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 21 - 450
Target Start/End: Complemental strand, 44566596 - 44566167
Alignment:
| Q |
21 |
ggtgatgtcattgtatcagaagtattaacttgacaatgtttcatccggccgttttcagtcagcaaaaaagcaaatgtccatgtgactgccaaacccaaag |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44566596 |
ggtgatgtcattgtatcagaagtattaacttgacaatgtttcatccggccgttttcagtcagcaaaaaagcaaatgtccatgtgactgccaaacccaaag |
44566497 |
T |
|
| Q |
121 |
gcacctgtaaattaggtaaagaaaataatatcacttaacaaaaatcattttttacaccacagaaatttattttctcttctgaagagcaactcagaagaat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44566496 |
gcacctgtaaattaggtaaagaaaataatatcacttaacaaaaatcattttttacaccacagaaatttattttctcttctgaagagcaactcagaagaat |
44566397 |
T |
|
| Q |
221 |
aatgtggcattagacttactgcatatatctgaaatatgtgatgtccaaaaacagatatcttacgaagatactgccaaaagcaatatataataaaatatat |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44566396 |
aatgtggcattagacttactgcatatatctgaaatatgtgatgtccaaaaacagatatcttacgaagatactgcaaaaagcaatatataataaaatatat |
44566297 |
T |
|
| Q |
321 |
cagcacactgcaacgattaataccatagacaaagtaggaatctgaattcaacaaacttacaagacaaaaaacaataaacactaatatctgtactgcaccg |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44566296 |
cagcacactgcaacgattaataccatagacaaagtaggaatctgaattcaacaaacttacaagacaaaaaacaataaacactaatatctgtactgcaccg |
44566197 |
T |
|
| Q |
421 |
atctcaagacacgtgccaactagaggaaaa |
450 |
Q |
| |
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| T |
44566196 |
atctcaagacacgtgccaactagaggaaaa |
44566167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 74 - 495
Target Start/End: Original strand, 36032639 - 36033056
Alignment:
| Q |
74 |
ttcagtcagcaaaaaagcaaatgtccatgtgactgccaaacccaaaggcacctgtaaattaggtaaagaaaata----atatcacttaacaaaaatcatt |
169 |
Q |
| |
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|||||||||||| ||||||| || |||||| | ||||||||||||||| ||||| |||||||||||| |||||| | ||||||||||| |||||||| |
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| T |
36032639 |
ttcagtcagcaagaaagcaactgcccatgtaattgccaaacccaaaggaacctgcaaattaggtaaaaaaaatatataacatcacttaacagaaatcatt |
36032738 |
T |
|
| Q |
170 |
ttttacaccacagaaatttattttctcttctgaagagcaactcagaagaataatgtggcattagacttactgcatatatctgaaatatgtgatgtccaaa |
269 |
Q |
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| |||||| ||||||||||||||| || || |||| ||||| |||| ||| | ||||||| ||||||||||||||| |||||||| | ||||||| |
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| T |
36032739 |
tgttacacagcagaaatttattttcactgctatagagtaactcggaaggatattatggcattgcacttactgcatatattagaaatatgcggtgtccaag |
36032838 |
T |
|
| Q |
270 |
aacagatatcttacgaagatactgccaaaagcaatatataataaaatatatcagcacactgcaacgattaataccatagacaaagtaggaatctgaattc |
369 |
Q |
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||||||||||||||||||||||||| ||||||||| | ||| | | ||||| | | | ||| ||||||||||||||||| ||| ||||||||| |
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| T |
36032839 |
aacagatatcttacgaagatactgcagaaagcaataaaaaatggatgaagtcagcgc---gtgatgatcaataccatagacaaagtgggagtctgaattc |
36032935 |
T |
|
| Q |
370 |
aacaaacttacaagacaaaaaacaataaacactaatatctgtactgcaccgatctcaagacacgtgccaactagaggaaaaccatagctatagaatgaaa |
469 |
Q |
| |
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||||||||| |||||||||||| ||||||||| |||| |||||| ||||||| ||| |||||||| |||||||||||||| | ||| ||||||| |
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| T |
36032936 |
-----acttacaagggaaaaaacaataaccactaatatttgtattgcaccaatctcaatacatgtgccaacaagaggaaaaccataaccataaaatgaaa |
36033030 |
T |
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| Q |
470 |
gtccaactgcagcaatggttgaggat |
495 |
Q |
| |
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||||||||||||||||||||| |||| |
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| T |
36033031 |
gtccaactgcagcaatggttggggat |
36033056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 373 - 495
Target Start/End: Complemental strand, 20122045 - 20121923
Alignment:
| Q |
373 |
aaacttacaagacaaaaaacaataaacactaatatctgtactgcaccgatctcaagacacgtgccaactagaggaaaaccatagctatagaatgaaagtc |
472 |
Q |
| |
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|||||| ||||| | |||||||||| ||||||||||||||||||||| ||||||||||| || || |||| || || || || || | |||||||||| |
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| T |
20122045 |
aaacttccaagagagaaaacaataaccactaatatctgtactgcaccaatctcaagacatgtacccactaatgggaatccgtaactgaaaaatgaaagtc |
20121946 |
T |
|
| Q |
473 |
caactgcagcaatggttgaggat |
495 |
Q |
| |
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||||||||||||| |||| |||| |
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| T |
20121945 |
caactgcagcaatagttggggat |
20121923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 20122217 - 20122158
Alignment:
| Q |
234 |
acttactgcatatatctgaaatatgtgatgtccaaaaacagatatcttacgaagatactg |
293 |
Q |
| |
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||||||||| || || |||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
20122217 |
acttactgcgtagattagaaatatgcgatgtccaagaacagatatcttacgaagatactg |
20122158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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