View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10338_low_3 (Length: 466)
Name: NF10338_low_3
Description: NF10338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10338_low_3 |
 | |
|
| [»] chr6 (30 HSPs) |
| |
|
| [»] scaffold0288 (1 HSPs) |
| |
|
| [»] scaffold0475 (1 HSPs) |
| |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 399; Significance: 0; HSPs: 30)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 16 - 466
Target Start/End: Original strand, 4558202 - 4558652
Alignment:
| Q |
16 |
tatccaacaatgtactaaaatgaataaaagtcaaaaatgtacatgcattggatggactaaagaaaacgacagcgattgaaagttcttcagcagcttgtat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||| |
|
|
| T |
4558202 |
tatccaacaatgtactaaaatgaataaaagtcaaaaatgtacatgcattggatggactaaagaaaacagaagggattgaaagttcttcagaagcttgtat |
4558301 |
T |
|
| Q |
116 |
ggtaaaagacatgctaatatcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagcaagaagttcgcggaaaggt |
215 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4558302 |
ggtaaaagacatgccaatatcagaaactatgcaagtaactggagggacaagaccagatgttgcagagtcatttagtctagcaagaagttcgcggaaaggt |
4558401 |
T |
|
| Q |
216 |
tgtaggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggtaaaccatctggaatagtctcaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
4558402 |
tgtaggaagttctttctgattgatttacaaagagcgtaaatgtcttgactaacatcgccatcaccatccgttggagttaaaccatccggaatagtctcaa |
4558501 |
T |
|
| Q |
316 |
aggtaaaatcagtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaaacctct |
415 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4558502 |
agctaaaatcagtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaatcctct |
4558601 |
T |
|
| Q |
416 |
aaggtgaagaagttttgctagtttcaacaatggattgatatggccttgaac |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4558602 |
aaggtgaagaagttttgctagtttcaacaatggattgatatggccttgaac |
4558652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 24 - 466
Target Start/End: Original strand, 4572051 - 4572493
Alignment:
| Q |
24 |
aatgtactaaaatgaataaaagtcaaaaatgtacatgcattggatggactaaagaaaacgacagcgattgaaagttcttcagcagcttgtatggtaaaag |
123 |
Q |
| |
|
||||||| ||||||||| ||||| ||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||| ||||| | |
|
|
| T |
4572051 |
aatgtacgtaaatgaataccagtcagaaatgtacatgcattggatggactaaagacaacattagggattgaaagttcttcagcagcttgtatagtaaagg |
4572150 |
T |
|
| Q |
124 |
acatgctaatatcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagcaagaagttcgcggaaaggttgtaggaa |
223 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
4572151 |
acatgctaatatcagaaactatgcaactaactggacggacaagaccagatgttgcagagtcattaagtctagcaagaagttcgcggaaaggttgtagaaa |
4572250 |
T |
|
| Q |
224 |
gttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggtaaaccatctggaatagtctcaaaggtaaaa |
323 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||| ||||| |
|
|
| T |
4572251 |
attcttcctgattgatttacaaagagcgtaaatgtcttgactaacatcgccatcgccatccgttggagataaaccatctggaatactctcaaagttaaaa |
4572350 |
T |
|
| Q |
324 |
tcagtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaaacctctaaggtgaa |
423 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4572351 |
ttggtgaaaccatcaaaggcattttgacctcttgacttgagcaaccgtttgtgattgtattcagtgtttacataggttatgtgaaaacctctaaggtgaa |
4572450 |
T |
|
| Q |
424 |
gaagttttgctagtttcaacaatggattgatatggccttgaac |
466 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4572451 |
gaaattttgctagttgcaacaatggattgatatggccttgaac |
4572493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 466
Target Start/End: Original strand, 4586709 - 4587159
Alignment:
| Q |
16 |
tatccaacaatgtactaaaatgaataaaagtcaaaaatgtacatgcattggatggactaaagaaaacgacagcgattgaaagttcttcagcagcttgtat |
115 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||| ||| |||| |||||||||| | | || |||||||||||||||||||||||| |
|
|
| T |
4586709 |
tatccaacaatgtactaaaatgaatacaagtcaaaaacatacatgcactggctggattaaagaaaacaagtgggagtgaaagttcttcagcagcttgtat |
4586808 |
T |
|
| Q |
116 |
ggtaaaagacatgctaatatcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagcaagaagttcgcggaaaggt |
215 |
Q |
| |
|
||||| |||||| |||||||||||||||| ||||| |||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4586809 |
agtaaaggacatggtaatatcagaaactatacaagtgactggagggataagaccagatgttgcagagtcattaagtctagcaagaagttcgcggaaaggt |
4586908 |
T |
|
| Q |
216 |
tgtaggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggtaaaccatctggaatagtctcaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4586909 |
tgtaggaagttctttctgattgatttacaaagagcgtaaatgtcttgactaacatcaccatcaccatccgttggagttaaaccatctggaatagtctcaa |
4587008 |
T |
|
| Q |
316 |
aggtaaaatcagtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaaacctct |
415 |
Q |
| |
|
|| |||||||||| ||| ||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
4587009 |
agctaaaatcagttaaatcatcaaaggcatttggagctcttgacttaagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaatcctcg |
4587108 |
T |
|
| Q |
416 |
aaggtgaagaagttttgctagtttcaacaatggattgatatggccttgaac |
466 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4587109 |
aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaac |
4587159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 44 - 466
Target Start/End: Complemental strand, 4612747 - 4612319
Alignment:
| Q |
44 |
agtcaaaaatgtacatgcattggatggactaaagaaaacgacagcgattgaaagttcttcagcagcttgtatggtaaaagacatgctaatatcagaaact |
143 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||| |||||| || | |
|
|
| T |
4612747 |
agtccaaaatgtacatgcattggctggactaaagaaaacaacagggattgaaagttcttcaccagcttgtatggtaaaagacatgctattatcagcaatt |
4612648 |
T |
|
| Q |
144 |
atgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagcaagaagttcgcggaaaggttgtaggaagttctttctgattgatttac |
243 |
Q |
| |
|
||||| ||||| ||||||||||||||||| || |||||||||| ||||||| || ||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
4612647 |
atgcacgtaaccggagggacaagaccagaagtggcagagtcattaagtctagaaataagttcgcgaaaaggttgtaggaagttctttctgattgattcac |
4612548 |
T |
|
| Q |
244 |
aaagagcgtgtatgtcttgactaacatcgccatcaccatc-----cg-ttggaggtaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatc |
337 |
Q |
| |
|
||||||| | |||||||||||||||||| ||||||||||| || ||| ||||| ||||||||| |||| ||||||||||||||||||||||||| | |
|
|
| T |
4612547 |
aaagagcatatatgtcttgactaacatcaccatcaccatcgccttcgtttgaaggtagaccatctggtatagcctcaaaggtaaaatcagtgaaaccaac |
4612448 |
T |
|
| Q |
338 |
aaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaaacctctaaggtgaagaagttttgctagt |
437 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| |||||||| ||||| || | ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4612447 |
aaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttgacgaatgttatgtgaaagcctctaaggtgaagaagttttgctagt |
4612348 |
T |
|
| Q |
438 |
ttcaacaatggattgatatggccttgaac |
466 |
Q |
| |
|
|| | ||||||||||||||||||||||| |
|
|
| T |
4612347 |
ttgattaatggattgatatggccttgaac |
4612319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 43 - 465
Target Start/End: Original strand, 4581118 - 4581540
Alignment:
| Q |
43 |
aagtcaaaaatgtacatgcattggatggactaaagaaaacgacagcgattgaaagttcttcagcagcttgtatggtaaaagacatgctaatatcagaaac |
142 |
Q |
| |
|
|||||||||| |||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||||||||| |||||| |||||||| |||||||||| |
|
|
| T |
4581118 |
aagtcaaaaacatacatgcactggctggactaaagaaaacaacagggattgaaagttcttcagcagcttgtattgtaaaatacatgctattatcagaaac |
4581217 |
T |
|
| Q |
143 |
tatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagcaagaagttcgcggaaaggttgtaggaagttctttctgattgattta |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||| | |
|
|
| T |
4581218 |
tatgcaagtaactggagggacaagaccagaagtggcagagtcattaagtctagcaagaagttcacaaaaaggttgtaggaagttctttctgattgattca |
4581317 |
T |
|
| Q |
243 |
caaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggtaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaagg |
342 |
Q |
| |
|
|| ||||| | |||||||||| ||||||| | ||| || || | |||| ||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
4581318 |
catagagcatatatgtcttgattaacatcactatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcggtgaaaccatcaaacg |
4581417 |
T |
|
| Q |
343 |
catttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaaacctctaaggtgaagaagttttgctagtttcaa |
442 |
Q |
| |
|
| |||||||||||||| |||||||| |||||||| |||||||| ||||| ||| ||||||||||||| ||||||||||||||||| ||||||||| | | |
|
|
| T |
4581418 |
cttttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttgacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtgttat |
4581517 |
T |
|
| Q |
443 |
caatggattgatatggccttgaa |
465 |
Q |
| |
|
|||||| ||||||| ||||||| |
|
|
| T |
4581518 |
taatggagtgatatgtccttgaa |
4581540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 134 - 466
Target Start/End: Complemental strand, 4489130 - 4488798
Alignment:
| Q |
134 |
atcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagcaagaagttcgcggaaaggttgtaggaagttctttctg |
233 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| || |||||||||| ||| ||||||||| | | | || ||| | || || || || |
|
|
| T |
4489130 |
atcagaaactaagcaagtaactggagggataagaccagcagtagcagagtcattaagtttagcaagaaatacaccaaagaattggtgaaaattgttcatg |
4489031 |
T |
|
| Q |
234 |
attgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggtaaaccatctggaatagtctcaaaggtaaaatcagtgaaac |
333 |
Q |
| |
|
|||||| |||||||||| ||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
4489030 |
attgatagacaaagagcgcgtaaatcttgactaacatcgccatcaccatctgttggagttaaaccatctggaatagtctcaaagctaaaatcagttaaac |
4488931 |
T |
|
| Q |
334 |
catcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaaacctctaaggtgaagaagttttgc |
433 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||| ||||||||||||| |||||||||||||| |||||| | |
|
|
| T |
4488930 |
catcaaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttgacaaaggttatgtgaaatcctctaaggtgaagtagttttcc |
4488831 |
T |
|
| Q |
434 |
tagtttcaacaatggattgatatggccttgaac |
466 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
4488830 |
tagtttcaacaatgcattgatatggccttgaac |
4488798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 222 - 466
Target Start/End: Original strand, 3173286 - 3173530
Alignment:
| Q |
222 |
aagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggtaaaccatctggaatagtctcaaaggtaa |
321 |
Q |
| |
|
|||||||| |||||||| |||||||||| ||| ||||||||||||||| |||||||| ||| ||| || |||||||||||| |||||||||||| ||| |
|
|
| T |
3173286 |
aagttcttgatgattgatcgacaaagagcgcgtaagtcttgactaacatcaccatcaccttccattgaagttaaaccatctggtatagtctcaaagttaa |
3173385 |
T |
|
| Q |
322 |
aatcagtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaaacctctaaggtg |
421 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||| ||| |
|
|
| T |
3173386 |
aatcattgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtg |
3173485 |
T |
|
| Q |
422 |
aagaagttttgctagtttcaacaatggattgatatggccttgaac |
466 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3173486 |
aagtagttttgctagtttcaacaatgcattgatatggccttgaac |
3173530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 97 - 465
Target Start/End: Original strand, 4627308 - 4627676
Alignment:
| Q |
97 |
gttcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagc |
196 |
Q |
| |
|
||||||||||||||||||||||||| ||||| | ||| ||||||| |||||||||||| | |||||||||| || | ||||||| ||| |||| |
|
|
| T |
4627308 |
gttcttcagcagcttgtatggtaaatgacattaaacaatctgaaactaagcaagtaactggtgcaacaagaccagcagtggctgagtcatgaagtttagc |
4627407 |
T |
|
| Q |
197 |
aagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggtaaa |
296 |
Q |
| |
|
||||||||| | || || || |||||||||||||| ||||||| |||||| ||||||||||| |||||||||||||||| || ||| | |||| |
|
|
| T |
4627408 |
aagaagttcaccaaagggctgaaggaagttctttcttattgattgggaaagagatggtatgtcttgagtaacatcgccatcaccttctagtggtgttaaa |
4627507 |
T |
|
| Q |
297 |
ccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacat |
396 |
Q |
| |
|
|||||||| || |||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||| |||||||| |||||||||||||| ||| |
|
|
| T |
4627508 |
ccatctggtatggtctcaaaggtaaaatcatcgaaaccatcaaaggcattttcacctcttgatttgagcaaacgtttgtgattgtattcagtgttgacaa |
4627607 |
T |
|
| Q |
397 |
aggttatgtgaaaacctctaaggtgaagaagttttgctagtttcaacaatggattgatatggccttgaa |
465 |
Q |
| |
|
||||||||||||| |||||||||||||| | |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4627608 |
aggttatgtgaaagcctctaaggtgaagtaattttgctagtatcaacaatggattgatatggccttgaa |
4627676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 43 - 465
Target Start/End: Original strand, 4599268 - 4599689
Alignment:
| Q |
43 |
aagtcaaaaatgtacatgcattggatggactaaagaaaacgacagcgattgaaagttcttcagcagcttgtatggtaaaagacatgctaatatcagaaac |
142 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||| | || | |||||||||||||||| ||||||| ||||| |||||| | |||| ||| |
|
|
| T |
4599268 |
aagtcaagaatgtacatgcattggatggactaaagagaacaataggaagtgaaagttcttcagcaacttgtatagtaaaggacatgttccaatca-taac |
4599366 |
T |
|
| Q |
143 |
tatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagcaagaagttcgcggaaaggttgtaggaagttctttctgattgattta |
242 |
Q |
| |
|
|| ||||||||||||||||| |||||||| || ||| |||| |||||||||||||||||||| || ||||| |||||||| ||||||||||||||| |
|
|
| T |
4599367 |
taagcaagtaactggagggataagaccagcagtagaagactcatagagtctagcaagaagttcgcgaaatggttggaggaagttatttctgattgattta |
4599466 |
T |
|
| Q |
243 |
caaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggtaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaagg |
342 |
Q |
| |
|
|| |||| | |||||| || ||||||| ||||||||||| |||||| ||||||||||||||||||||| |||| ||||||||||||||||| | | |
|
|
| T |
4599467 |
cagagagaatttatgtcctgtgtaacatcaccatcaccatctattggagttaaaccatctggaatagtctcgaaggaaaaatcagtgaaaccattacgag |
4599566 |
T |
|
| Q |
343 |
catttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaaacctctaaggtgaagaagttttgctagtttcaa |
442 |
Q |
| |
|
||| ||||||||||| |||||||| |||||||| ||||| || ||||| || ||||||||| ||| |||||||||||||||| ||||||||||| | |
|
|
| T |
4599567 |
aattaggacctcttgatttgagcaagcgtttgtgattgtactcggtgttcacgaaggttatgtaaaatcctctaaggtgaagaatctttgctagtttgat |
4599666 |
T |
|
| Q |
443 |
caatggattgatatggccttgaa |
465 |
Q |
| |
|
||| ||||||||| ||||||| |
|
|
| T |
4599667 |
taatagattgatatttccttgaa |
4599689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 97 - 465
Target Start/End: Original strand, 4517498 - 4517866
Alignment:
| Q |
97 |
gttcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagc |
196 |
Q |
| |
|
||||||||||||||||||| ||||||| || | |||||||||||||| |||| |||| ||||| | | ||||| | ||| || || |||||||| |
|
|
| T |
4517498 |
gttcttcagcagcttgtatagtaaaagtcaatccaatatcagaaactaagcaactaacaggaggaatatgaccatcattggaagaatctttaagtctagc |
4517597 |
T |
|
| Q |
197 |
aagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggtaaa |
296 |
Q |
| |
|
||||||||| | ||| || || ||| |||||||| ||||| | |||||| | ||||||||||||||||| ||||| || || | |||| |||| |
|
|
| T |
4517598 |
aagaagttcacagaaggggtgatagaaattctttcttattgaatcggaaagagagataatgtcttgactaacatcaccatcgccttctatcggagttaaa |
4517697 |
T |
|
| Q |
297 |
ccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacat |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||| ||||| ||| |
|
|
| T |
4517698 |
ccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttggacctcttgatttgagcaaacgtttgtgattgtattcggtgttgacaa |
4517797 |
T |
|
| Q |
397 |
aggttatgtgaaaacctctaaggtgaagaagttttgctagtttcaacaatggattgatatggccttgaa |
465 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
4517798 |
aggttatgtgaaagcctctaagatgaagaagttttgctagttttaacaacggattgatatggccttgaa |
4517866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 222 - 466
Target Start/End: Original strand, 4575738 - 4575982
Alignment:
| Q |
222 |
aagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggtaaaccatctggaatagtctcaaaggtaa |
321 |
Q |
| |
|
|||||| || ||||||||| || ||||| ||||| ||||||||| ||||| |||| ||||||| |||||| |||||||||||| |||||||||||| ||| |
|
|
| T |
4575738 |
aagttcgttatgattgattcaccaagagagtgtaggtcttgacttacatcaccattaccatcctttggagttaaaccatctggtatagtctcaaagttaa |
4575837 |
T |
|
| Q |
322 |
aatcagtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaaacctctaaggtg |
421 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||| |||||||| |||||||| |||||||||||||| ||| ||||||||||||| ||||||||||| |
|
|
| T |
4575838 |
agtcagtgaaaccatcaaaggcattttcacctcttgatttgagcaaacgtttgtgattgtattcagtgttaacaaaggttatgtgaaagcctctaaggtg |
4575937 |
T |
|
| Q |
422 |
aagaagttttgctagtttcaacaatggattgatatggccttgaac |
466 |
Q |
| |
|
||| |||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
4575938 |
aagcagttttgctattttcaacaatgcattgatatggccttgaac |
4575982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 134 - 464
Target Start/End: Original strand, 4507106 - 4507436
Alignment:
| Q |
134 |
atcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagcaagaagttcgcggaaaggttgtaggaagttctttctg |
233 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||||||||| | ||||||||| |||||||| ||||||||||| ||||| | | || |||||||| |
|
|
| T |
4507106 |
atcagaaactaagcaagtaacaggaggcacaagaccagatttcgcagagtcatcaagtctagctagaagttcgcgaaaagggtaaataaatttctttcta |
4507205 |
T |
|
| Q |
234 |
attgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggtaaaccatctggaatagtctcaaaggtaaaatcagtgaaac |
333 |
Q |
| |
|
|| |||| || || || | | |||| || ||||||| |||||||||||| |||||| |||||||||||| | |||||||||| ||||||||||||||| |
|
|
| T |
4507206 |
atcgattcacgaatagatttcaagtctggattaacatcaccatcaccatccattggagttaaaccatctggtagagtctcaaagttaaaatcagtgaaac |
4507305 |
T |
|
| Q |
334 |
catcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaaacctctaaggtgaagaagttttgc |
433 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| |||||||| |||||||| ||||| ||| ||||||||||||| |||| |||||||||||| || || |
|
|
| T |
4507306 |
catcaaaggcattttcacctcttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaagcctcgaaggtgaagaagcttagc |
4507405 |
T |
|
| Q |
434 |
tagtttcaacaatggattgatatggccttga |
464 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |
|
|
| T |
4507406 |
tagtttgaacaatggattgatatggccttga |
4507436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 99 - 466
Target Start/End: Original strand, 4623467 - 4623834
Alignment:
| Q |
99 |
tcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagcaa |
198 |
Q |
| |
|
||||||||||||||||| ||||| |||||| | ||| ||||||| |||||||||||| || |||||||||| || ||||||||| ||| | |||| |
|
|
| T |
4623467 |
tcttcagcagcttgtattgtaaatgacatgtaacaatcggaaactaagcaagtaactggtggaacaagaccagcagtggcagagtcatgaagttttgcaa |
4623566 |
T |
|
| Q |
199 |
gaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggtaaacc |
298 |
Q |
| |
|
||||||| | || || || ||| ||||| || ||||| | | |||||| | ||||||||||||||||||| |||||||| ||| |||| | |||||| |
|
|
| T |
4623567 |
gaagttcacaaaagggatgatagaaattcttccttattgaatcagaaagagagggtatgtcttgactaacatcaccatcaccttccattggtgttaaacc |
4623666 |
T |
|
| Q |
299 |
atctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacatag |
398 |
Q |
| |
|
||||||||| ||||||||| |||| || ||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||| |||| || || |
|
|
| T |
4623667 |
atctggaatggtctcaaagttaaagtccgtgaaaccatcaaaggcctttggacctcttgatttgagcaagcgtttgtgattgtattcggtgtgaccaaag |
4623766 |
T |
|
| Q |
399 |
gttatgtgaaaacctctaaggtgaagaagttttgctagtttcaacaatggattgatatggccttgaac |
466 |
Q |
| |
|
||||||||||| ||| |||||| |||||| ||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
4623767 |
gttatgtgaaagcctttaaggtaaagaagctttgctagtttgaacaatggattgatatgaccttgaac |
4623834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 99 - 464
Target Start/End: Complemental strand, 4259144 - 4258779
Alignment:
| Q |
99 |
tcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagcaa |
198 |
Q |
| |
|
||||||||||||||||| |||| |||||| | ||||||||||| ||||||||| || || |||| ||||| || | ||||| | ||| |||||| |
|
|
| T |
4259144 |
tcttcagcagcttgtatactaaatgacatgtaacaatcagaaactaagcaagtaacaggtggaacaataccagtagtggctgagtcttgaagtttagcaa |
4259045 |
T |
|
| Q |
199 |
gaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggtaaacc |
298 |
Q |
| |
|
||||||| | || || || |||||||||||||| || |||| | |||| | | ||| ||||||| |||||||||||||||| ||| ||||| | ||| |
|
|
| T |
4259044 |
gaagttcaccaaagggctgaaggaagttctttcttatagattgagaaagggagggtacgtcttgagtaacatcgccatcaccttccactggagtcagacc |
4258945 |
T |
|
| Q |
299 |
atctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacatag |
398 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||||||| |||||||| |||||||| || ||||||||||| ||| || |
|
|
| T |
4258944 |
atcttgaatagtctcaaaggtaaaatcaatgaaaccatcaacggcattttcacctcttgatttgagcaaacgtttgtgattatattcagtgttgacaaag |
4258845 |
T |
|
| Q |
399 |
gttatgtgaaaacctctaaggtgaagaagttttgctagtttcaacaatggattgatatggccttga |
464 |
Q |
| |
|
||||||||||||||| ||| ||||||||| || |||||||| |||||||||||||||||||||||| |
|
|
| T |
4258844 |
gttatgtgaaaacctttaaagtgaagaagcttagctagtttgaacaatggattgatatggccttga |
4258779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 219 - 466
Target Start/End: Original strand, 4618581 - 4618828
Alignment:
| Q |
219 |
aggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggtaaaccatctggaatagtctcaaagg |
318 |
Q |
| |
|
|||||||||||||| | ||||| |||||||| ||| |||||||||||||| |||||||| ||| |||| | ||||||||||||||| |||||||| |
|
|
| T |
4618581 |
aggaagttctttcttactgattgacaaagagttggtacatcttgactaacatcaccatcaccttccattggtgttaaaccatctggaatgctctcaaagt |
4618680 |
T |
|
| Q |
319 |
taaaatcagtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaaacctctaag |
418 |
Q |
| |
|
|||| || |||||||||||||| || |||||||||||||| |||||||| |||||||| |||||||| ||||| ||| ||||||||||||| |||||||| |
|
|
| T |
4618681 |
taaagtccgtgaaaccatcaaaagcctttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaagcctctaag |
4618780 |
T |
|
| Q |
419 |
gtgaagaagttttgctagtttcaacaatggattgatatggccttgaac |
466 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4618781 |
gtgaagaagctttgctagtttgaacaatggattgatatggccttgaac |
4618828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 222 - 466
Target Start/End: Original strand, 4561945 - 4562189
Alignment:
| Q |
222 |
aagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggtaaaccatctggaatagtctcaaaggtaa |
321 |
Q |
| |
|
|||||| || ||||||||| || ||||| ||||| ||||||||||| ||| |||||||||||| |||||| |||||||||||| |||||||||||| ||| |
|
|
| T |
4561945 |
aagttcgttatgattgattcaccaagagagtgtaggtcttgactaatatcaccatcaccatcctttggagttaaaccatctggtatagtctcaaagttaa |
4562044 |
T |
|
| Q |
322 |
aatcagtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacatagg-ttatgtgaaaacctctaaggt |
420 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||| || ||||| |||||||| |||||||||||||| ||| ||| |||||||||| ||||| |||| |
|
|
| T |
4562045 |
agtcagtgaaaccatcaaaggcattttcacctcttga-tttagcaaacgtttgtgattgtattcagtgttaacaaaggtttatgtgaaagcctcttaggt |
4562143 |
T |
|
| Q |
421 |
gaagaagttttgctagtttcaacaatggattgatatggccttgaac |
466 |
Q |
| |
|
|||| |||||||||| ||||||||||| ||||||||| |||||||| |
|
|
| T |
4562144 |
gaagcagttttgctattttcaacaatgcattgatatgaccttgaac |
4562189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 258 - 465
Target Start/End: Original strand, 4569393 - 4569596
Alignment:
| Q |
258 |
tcttgactaacatcgccatcaccatccgttggaggtaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcatttggacctcttg |
357 |
Q |
| |
|
|||||||||| ||| |||| ||| || || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4569393 |
tcttgactaatatcaccataaccttctgtcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttggacctcttg |
4569492 |
T |
|
| Q |
358 |
acttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaaacctctaaggtgaagaagttttgctagtttcaacaatggattgatatg |
457 |
Q |
| |
|
| |||||||| ||||||| | ||| ||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4569493 |
atttgagcaaatgtttgtgat----ttcggtgttgacaaaggttatgtgaaagcctctaaggtgaagaagttttgctagtttcaataatggattgatatg |
4569588 |
T |
|
| Q |
458 |
gccttgaa |
465 |
Q |
| |
|
|||||||| |
|
|
| T |
4569589 |
gccttgaa |
4569596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 179 - 465
Target Start/End: Original strand, 4594250 - 4594536
Alignment:
| Q |
179 |
agagtcatttagtctagcaagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatca |
278 |
Q |
| |
|
||||||||| ||||| | ||||||||| | || |||| ||||| |||||||| || |||| | ||||| | ||||||||||||||||||| |||||| |
|
|
| T |
4594250 |
agagtcattaagtcttgtaagaagttcacaaaagggtttaaggaaattctttcttatagattgagcaagagagggtatgtcttgactaacatcaccatca |
4594349 |
T |
|
| Q |
279 |
ccatccgttggaggtaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggt |
378 |
Q |
| |
|
|| ||| |||| | || ||||||||| || || |||||| ||||| ||| ||||||||| |||||||||||||||||||| |||||||| ||||| || | |
|
|
| T |
4594350 |
ccttccattggtgttagaccatctggtatggtttcaaagctaaaaccagggaaaccatctaaggcatttggacctcttgatttgagcaaacgtttatgat |
4594449 |
T |
|
| Q |
379 |
tgtattcagtgtttacataggttatgtgaaaacctctaaggtgaagaagttttgctagtttcaacaatggattgatatggccttgaa |
465 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||| |
|
|
| T |
4594450 |
tgtattcagtgttgacaaaggttatgtgaaatcctctaaggtgaagaagttttgcaagtttgaacaatggatttatatgtccttgaa |
4594536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 95 - 465
Target Start/End: Complemental strand, 4513954 - 4513581
Alignment:
| Q |
95 |
aagttcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtcta |
194 |
Q |
| |
|
||||||||||||| ||||| | ||||| | ||| || ||||||||||| ||||||||| ||| | |||||| | | || |||||||||| ||| || |
|
|
| T |
4513954 |
aagttcttcagcaacttgtgtagtaaatggcataatacaatcagaaactaagcaagtaacaaaaggtataagaccggcttttgcagagtcattaagttta |
4513855 |
T |
|
| Q |
195 |
gcaagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatca---ccatccgttggag |
291 |
Q |
| |
|
|| | ||||||||| ||||||| | | | |||||||||||||||| | ||||| | ||||||| || |||| ||| || |||||| |||||| |
|
|
| T |
4513854 |
gctaaaagttcgcgaaaaggttcgatgcaattctttctgattgattcgcgaagagatatcaagtcttgagtagcatcaccaccatcgccatccattggag |
4513755 |
T |
|
| Q |
292 |
gtaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtt |
391 |
Q |
| |
|
||||||||| ||||||||||||||| |||||| |||||||||||||| ||||| ||||||||||| |||||||| |||||||| |||||||| ||||| |
|
|
| T |
4513754 |
ttaaaccatcaggaatagtctcaaagcgaaaatcggtgaaaccatcaaaagcattaggacctcttgatttgagcaaacgtttgtgattgtattcggtgtt |
4513655 |
T |
|
| Q |
392 |
tacataggttatgtgaaaacctctaaggtgaagaagttttgctagtttcaacaatggattgatatggccttgaa |
465 |
Q |
| |
|
||| ||||||||||||| |||||||||||||| |||||||||| | | |||| |||||||||||||||||||| |
|
|
| T |
4513654 |
aacaaaggttatgtgaaagcctctaaggtgaagtagttttgctaatctgaacattggattgatatggccttgaa |
4513581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 257 - 464
Target Start/End: Original strand, 4482183 - 4482390
Alignment:
| Q |
257 |
gtcttgactaacatcgccatcaccatccgttggaggtaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcatttggacctctt |
356 |
Q |
| |
|
||||||||| || || ||||||| || |||||| |||||||||||| || || |||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
4482183 |
gtcttgacttacttcatcatcaccttcaattggagttaaaccatctggtatcgtttcaaaggtaaaatcagtgaaaccatcaaaggcttttggacccctt |
4482282 |
T |
|
| Q |
357 |
gacttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaaacctctaaggtgaagaagttttgctagtttcaacaatggattgatat |
456 |
Q |
| |
|
|| || ||||| |||||||| |||||||| ||||| ||| ||||||||||||| |||||||||||||| |||||| ||| ||||||||||| |||||||| |
|
|
| T |
4482283 |
gattttagcaaacgtttgtgattgtattcggtgttgacaaaggttatgtgaaagcctctaaggtgaagtagttttcctattttcaacaatgcattgatat |
4482382 |
T |
|
| Q |
457 |
ggccttga |
464 |
Q |
| |
|
|||||||| |
|
|
| T |
4482383 |
ggccttga |
4482390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 134 - 417
Target Start/End: Complemental strand, 4503226 - 4502943
Alignment:
| Q |
134 |
atcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagcaagaagttcgcggaaaggttgtaggaagttctttctg |
233 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| || |||||||||| ||| || |||||| ||| | || ||| | || ||||| || |
|
|
| T |
4503226 |
atcagaaactaagcaagtaactggagggataagaccagcagtggcagagtcattaagtttaacaagaaattcaccaaagaattggtgaaaattcttcttg |
4503127 |
T |
|
| Q |
234 |
attgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggtaaaccatctggaatagtctcaaaggtaaaatcagtgaaac |
333 |
Q |
| |
|
|||||| | | |||||| ||| ||||||||||||||| |||||||| ||| |||| |||||||||||| || |||||||||||||||||| |||||| |
|
|
| T |
4503126 |
attgatagatagagagcgcgtaagtcttgactaacatcaccatcaccttccaccggagttaaaccatctggtatggtctcaaaggtaaaatcattgaaac |
4503027 |
T |
|
| Q |
334 |
catcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaaacctctaa |
417 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||| ||| ||||||||||||| ||||||| |
|
|
| T |
4503026 |
catcaaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttgacaaaggttatgtgaaatcctctaa |
4502943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 134 - 464
Target Start/End: Original strand, 4471112 - 4471439
Alignment:
| Q |
134 |
atcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagcaagaagttcgcggaaaggttgtaggaagttctttctg |
233 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| || ||||| ||| ||||||| ||||||||| | || ||||| ||||||| | | || |
|
|
| T |
4471112 |
atcagaaattatgcaagtaactggagggataagaccagcagtggcagaggcatcaagtctagtaagaagttcaccaaagggttgaaggaagtccgtcatg |
4471211 |
T |
|
| Q |
234 |
attgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggtaaaccatctggaatagtctcaaaggtaaaatcagtgaaac |
333 |
Q |
| |
|
|||||| | ||| | ||||||||||||| ||| ||| ||| | ||| ||| || ||||||| |||||| ||||||||| |||| |||||||||| |
|
|
| T |
4471212 |
attgatcgaaaaaaggagtgtatgtcttgaataagatcacca---ctttccattgcagtaaaaccatttggaatggtctcaaagttaaagtcagtgaaac |
4471308 |
T |
|
| Q |
334 |
catcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaaacctctaaggtgaagaagttttgc |
433 |
Q |
| |
|
|||||| | || ||||||||||| |||||||| |||||| |||||||||||||| ||| | ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
4471309 |
catcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttgacaaacgttatgtgaaagcctctaaggtgaagaagctttgc |
4471408 |
T |
|
| Q |
434 |
tagtttcaacaatggattgatatggccttga |
464 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |
|
|
| T |
4471409 |
tagtttcaacaatgcattgatatggccttga |
4471439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 245 - 465
Target Start/End: Complemental strand, 4265879 - 4265659
Alignment:
| Q |
245 |
aagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggtaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggca |
344 |
Q |
| |
|
||||| || |||||||||| || |||| |||| || ||| |||||| || ||||||||| || |||||||| |||| ||| |||||||||||| | | |
|
|
| T |
4265879 |
aagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaa |
4265780 |
T |
|
| Q |
345 |
tttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaaacctctaaggtgaagaagttttgctagtttcaaca |
444 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||||| ||| |||| || |||| |
|
|
| T |
4265779 |
tttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttgacaaaggttatgtgaaagcctctaaggtgaagaagctttcctagattgaaca |
4265680 |
T |
|
| Q |
445 |
atggattgatatggccttgaa |
465 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
4265679 |
atgcattgatatggccttgaa |
4265659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 297 - 465
Target Start/End: Original strand, 4603468 - 4603636
Alignment:
| Q |
297 |
ccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacat |
396 |
Q |
| |
|
|||||||| || || |||||| ||||||||||||| || || |||||||| ||||||||||| |||||||| |||||||| |||||||| ||||| ||| |
|
|
| T |
4603468 |
ccatctgggattgtttcaaagctaaaatcagtgaagccgtctaaggcattaggacctcttgatttgagcaaacgtttgtgattgtattcggtgttgacaa |
4603567 |
T |
|
| Q |
397 |
aggttatgtgaaaacctctaaggtgaagaagttttgctagtttcaacaatggattgatatggccttgaa |
465 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4603568 |
aggttatgtgaaatcctctaaggtgaaatagttttgctagtttcaacattggattgatatggccttgaa |
4603636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 294 - 463
Target Start/End: Original strand, 4462562 - 4462731
Alignment:
| Q |
294 |
aaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgttta |
393 |
Q |
| |
|
||||||| |||||| ||||||||| |||| |||||||||||||| | | ||| ||||||||||| |||||||| | ||||| |||||||||||||| | |
|
|
| T |
4462562 |
aaaccatttggaatggtctcaaagttaaagtcagtgaaaccatctagagaattaggacctcttgaattgagcaagcaattgtgattgtattcagtgttga |
4462661 |
T |
|
| Q |
394 |
cataggttatgtgaaaacctctaaggtgaagaagttttgctagtttcaacaatggattgatatggccttg |
463 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
4462662 |
caaaggttatgtgaaaacctctaaggtgaagtagttttcctagtttcaacaatgcattgatatggccttg |
4462731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 97 - 391
Target Start/End: Complemental strand, 4298468 - 4298174
Alignment:
| Q |
97 |
gttcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagc |
196 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| || ||||| ||||| |||||||||||| || |||||||||| || |||| ||| ||| |||| |
|
|
| T |
4298468 |
gttcttccgcagcttgtatggtaaatgacattaaaaaatcagcaactaagcaagtaactggtggtacaagaccagcagtggcagaatcacgaagtttagc |
4298369 |
T |
|
| Q |
197 |
aagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggtaaa |
296 |
Q |
| |
|
||||||||| | || || || |||||||||||||||||||||| |||||| ||||||||||| ||||||| |||||||| |||||||||| | | |
|
|
| T |
4298368 |
aagaagttcaccaaagggctgaaggaagttctttctgattgattgggaaagagatggtatgtcttgagtaacatctccatcaccttccgttggagtcaga |
4298269 |
T |
|
| Q |
297 |
ccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtt |
391 |
Q |
| |
|
||||||||||||||||||||| |||| | |||||||||||||| || |||||||| ||||| | ||||| ||||||| |||||||| ||||| |
|
|
| T |
4298268 |
ccatctggaatagtctcaaagctaaagttggtgaaaccatcaaaagcttttggaccccttgattcgagcaggtgtttgtgattgtattcggtgtt |
4298174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 258 - 465
Target Start/End: Original strand, 4565348 - 4565555
Alignment:
| Q |
258 |
tcttgactaacatcgccatcaccatccgttggaggtaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcatttggacctcttg |
357 |
Q |
| |
|
|||||||||||||| |||||||| || | || | || ||||||||| || || |||||| |||| || | ||||||| ||||||||||||||||||| |
|
|
| T |
4565348 |
tcttgactaacatcaccatcaccttctatcggtgttagaccatctggtatggtttcaaagcaaaaaccacgggaaccatctaaggcatttggacctcttg |
4565447 |
T |
|
| Q |
358 |
acttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaaacctctaaggtgaagaagttttgctagtttcaacaatggattgatatg |
457 |
Q |
| |
|
| || ||||| ||||| || |||||||||||||| ||| ||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
4565448 |
attttagcaatcgtttatgattgtattcagtgttgacaaaggttatatgaaatcctctaaggtgaagaagttttgcaagtttgaacaatggatttatatg |
4565547 |
T |
|
| Q |
458 |
gccttgaa |
465 |
Q |
| |
|
||||||| |
|
|
| T |
4565548 |
tccttgaa |
4565555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 4255550 - 4255485
Alignment:
| Q |
326 |
agtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtt |
391 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||| | |||||| |||||||| |||||||| ||||| |
|
|
| T |
4255550 |
agtggaaccatcaaaggcttttggacctcttgattcgagcaagcgtttgtgattgtattcggtgtt |
4255485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 4497899 - 4497850
Alignment:
| Q |
413 |
tctaaggtgaagaagttttgctagtttcaacaatggattgatatggcctt |
462 |
Q |
| |
|
|||||||||||| | |||| |||||||||||||||||||||||||||||| |
|
|
| T |
4497899 |
tctaaggtgaagtaattttcctagtttcaacaatggattgatatggcctt |
4497850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 4255607 - 4255551
Alignment:
| Q |
99 |
tcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgcaagtaact |
155 |
Q |
| |
|
||||||||||||||||||||||| |||||| | ||||||||||| |||||||||| |
|
|
| T |
4255607 |
tcttcagcagcttgtatggtaaatgacatgtaacaatcagaaactaagcaagtaact |
4255551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 16 - 325
Target Start/End: Complemental strand, 16685345 - 16685029
Alignment:
| Q |
16 |
tatccaacaatgtactaaaatgaataaaagtcaaaaatgtacatgcattggatggactaaagaaaacgacagcgattgaaagttcttcagcagcttgtat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| ||| |||| || |||||||||||||||||||||||| |
|
|
| T |
16685345 |
tatccaacaatgtactaaaatgaataaaagttaaaaatgtacatgcattcgatggattaaagagaacaacagggagtgaaagttcttcagcagcttgtat |
16685246 |
T |
|
| Q |
116 |
ggtaaaagacatgctaatatcagaaactatgcaagtaactggagggacaagaccagatg-------tttcagagtcatttagtctagcaagaagttcgcg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| |||||||||||| ||||||| |
|
|
| T |
16685245 |
agtaaaagacatgctaatatcagaaactatgcaagtaactggagggacaagaccagatgatgcaccgtgcacggtcatgaagtctagcaagatgttcgcg |
16685146 |
T |
|
| Q |
209 |
gaaaggttgtaggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggtaaaccatctggaata |
308 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16685145 |
aaagggttggaggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggtaaaccatatggaata |
16685046 |
T |
|
| Q |
309 |
gtctcaaaggtaaaatc |
325 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
16685045 |
gtctcaaagctaaaatc |
16685029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 260 - 464
Target Start/End: Original strand, 1675842 - 1676046
Alignment:
| Q |
260 |
ttgactaacatcgccatcaccatccgttggaggtaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcatttggacctcttgac |
359 |
Q |
| |
|
|||||||||||| |||||||| || ||| | || ||||||||| || || |||||| ||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
1675842 |
ttgactaacatcaccatcaccttctagtggtgttagaccatctgggatggtttcaaagctaaaatcagtgaaaccatccaaggcagttggacctcttgat |
1675941 |
T |
|
| Q |
360 |
ttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaaacctctaaggtgaagaagttttgctagtttcaacaatggattgatatggc |
459 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| |||||||||| ||| | ||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1675942 |
ttgagcaaacgtttgtgattgtattcagtgttgacataggttacatgagagcctctaaggtgaataagttttgctagtttgaacaatggattgatatggc |
1676041 |
T |
|
| Q |
460 |
cttga |
464 |
Q |
| |
|
||||| |
|
|
| T |
1676042 |
cttga |
1676046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 95 - 465
Target Start/End: Complemental strand, 20862776 - 20862412
Alignment:
| Q |
95 |
aagttcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtcta |
194 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| | |||||||||||| ||||||||| ||||| | |||||||||| | |||||||| ||| | |
|
|
| T |
20862776 |
aagttcttcagcaacttgtatggtaactgacatgaaactatcagaaactaagcaagtaacaggaggtataagaccagatttggaagagtcatgaagtttg |
20862677 |
T |
|
| Q |
195 |
gcaagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggta |
294 |
Q |
| |
|
||||||||||| || ||| | | ||||||| |||||||| ||| || ||||| || | ||||||||||||||| |||||||| || || | |
|
|
| T |
20862676 |
gcaagaagttcacgaaaactgtcgatgaagttcgttctgattaattcacgaagagattggaagtcttgactaacatc---atcaccatg---tgaagttg |
20862583 |
T |
|
| Q |
295 |
aaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttac |
394 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||||||||||| ||||||| ||||||| ||||| |||||||| ||||||||||| || || |
|
|
| T |
20862582 |
aaccatctggaacggtctcaaagcgaaagtcagtgaaaccatcaaagggtattggacccattgacttaagcaagcgtttgtgattgtattcagtattgac |
20862483 |
T |
|
| Q |
395 |
ataggttatgtgaaaacctctaaggtgaagaagttttgctagtttcaacaatggattgatatggccttgaa |
465 |
Q |
| |
|
| | ||||||| ||| |||||||||||||| |||||||||||||| |||| |||||||||||| ||||||| |
|
|
| T |
20862482 |
aaatgttatgtaaaagcctctaaggtgaagtagttttgctagttttaacattggattgatatgaccttgaa |
20862412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 98 - 466
Target Start/End: Complemental strand, 2423 - 2052
Alignment:
| Q |
98 |
ttcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagca |
197 |
Q |
| |
|
|||||||||||||||||||||||| |||||| | ||||||||||| || ||| |||||||||| ||||||||| | |||| || | ||||||||| |
|
|
| T |
2423 |
ttcttcagcagcttgtatggtaaatgacatgtaacaatcagaaactaagctagttactggagggataagaccagaattggcagactcgtcaagtctagca |
2324 |
T |
|
| Q |
198 |
agaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatc---cgttggaggta |
294 |
Q |
| |
|
||||||||||| || || |||||||| |||||||||||||||||||||| | |||||||||||||||||| |||||| |||| | ||||| || |
|
|
| T |
2323 |
agaagttcgcgaaagaagtgaaggaagttttttctgattgatttacaaagagagagtatgtcttgactaacattaccatcatcatcttccactggagtta |
2224 |
T |
|
| Q |
295 |
aaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttac |
394 |
Q |
| |
|
||||||| ||||||||||| ||| |||||||| ||||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||||||||| || |
|
|
| T |
2223 |
aaccatcgggaatagtctcgaagcaaaaatcagcgaaaccatcaagagcattaggacctcttgatttgagcaagcgtttatgattgtattcagtgttgac |
2124 |
T |
|
| Q |
395 |
ataggttatgtgaaaacctctaaggtgaagaagttttgctagtttcaacaatggattgatatggccttgaac |
466 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2123 |
aaaggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaac |
2052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 134 - 466
Target Start/End: Original strand, 2016 - 2351
Alignment:
| Q |
134 |
atcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagcaagaagttcgcggaaaggttgtaggaagttctttctg |
233 |
Q |
| |
|
||||||||||| || ||| |||||||||| ||||||||| | |||| || | |||||||||||||||||||| || || |||||||| |||||| |
|
|
| T |
2016 |
atcagaaactaagctagttactggagggataagaccagaattggcagactcgtcaagtctagcaagaagttcgcgaaagaagtgaaggaagttttttctg |
2115 |
T |
|
| Q |
234 |
attgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatc---cgttggaggtaaaccatctggaatagtctcaaaggtaaaatcagtga |
330 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| |||||| |||| | ||||| ||||||||| ||||||||||| ||| |||||||| || |
|
|
| T |
2116 |
attgatttacaaagagagagtatgtcttgactaacattaccatcatcatcttccactggagttaaaccatcgggaatagtctcgaagcaaaaatcagcga |
2215 |
T |
|
| Q |
331 |
aaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaaacctctaaggtgaagaagttt |
430 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||||||||| ||| ||||||||||||| ||||||||||||||||| || |
|
|
| T |
2216 |
aaccatcaagagcattaggacctcttgatttgagcaagcgtttatgattgtattcagtgttgacaaaggttatgtgaaagcctctaaggtgaagaagctt |
2315 |
T |
|
| Q |
431 |
tgctagtttcaacaatggattgatatggccttgaac |
466 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||| |
|
|
| T |
2316 |
tgctagtttgaataatggattgatatggccttgaac |
2351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 260 - 464
Target Start/End: Original strand, 1079 - 1283
Alignment:
| Q |
260 |
ttgactaacatcgccatcaccatccgttggaggtaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcatttggacctcttgac |
359 |
Q |
| |
|
|||||||||||| |||||||| || ||| | || ||||||||| || || |||||| ||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
1079 |
ttgactaacatcaccatcaccttctagtggtgttagaccatctgggatggtttcaaagctaaaatcagtgaaaccatccaaggcagttggacctcttgat |
1178 |
T |
|
| Q |
360 |
ttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaaacctctaaggtgaagaagttttgctagtttcaacaatggattgatatggc |
459 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| |||||||||| ||| | ||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1179 |
ttgagcaaacgtttgtgattgtattcagtgttgacataggttacatgagagcctctaaggtgaataagttttgctagtttgaacaatggattgatatggc |
1278 |
T |
|
| Q |
460 |
cttga |
464 |
Q |
| |
|
||||| |
|
|
| T |
1279 |
cttga |
1283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 7e-53; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 219 - 464
Target Start/End: Original strand, 1282713 - 1282958
Alignment:
| Q |
219 |
aggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggtaaaccatctggaatagtctcaaagg |
318 |
Q |
| |
|
||||| |||||||| || |||| |||||||| ||| | |||||||||||| |||||||| || || | || ||||||||| || || |||||| |
|
|
| T |
1282713 |
aggaaattctttcttatagattgacaaagagaaggtacatgttgactaacatcaccatcaccttctagtgatgttagaccatctgggatggtttcaaagc |
1282812 |
T |
|
| Q |
319 |
taaaatcagtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaaacctctaag |
418 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| |||||||| |||||||| ||||||||||| || ||| ||||||||| ||| |||||||| |
|
|
| T |
1282813 |
taaaatcagtgaaaccatctagggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtattaacaaaggttatgtaaaagcctctaag |
1282912 |
T |
|
| Q |
419 |
gtgaagaagttttgctagtttcaacaatggattgatatggccttga |
464 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1282913 |
gtgaagtagttttgctagtttgaacaatggattgatatggccttga |
1282958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 413
Target Start/End: Original strand, 35776276 - 35776320
Alignment:
| Q |
369 |
cgtttgtggttgtattcagtgtttacataggttatgtgaaaacct |
413 |
Q |
| |
|
|||||||||||| |||||||||| ||| ||||||||||||||||| |
|
|
| T |
35776276 |
cgtttgtggttgaattcagtgttcacaaaggttatgtgaaaacct |
35776320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 412
Target Start/End: Original strand, 35842083 - 35842126
Alignment:
| Q |
369 |
cgtttgtggttgtattcagtgtttacataggttatgtgaaaacc |
412 |
Q |
| |
|
|||||||||||| |||||||||| ||| |||||||||||||||| |
|
|
| T |
35842083 |
cgtttgtggttgaattcagtgttcacaaaggttatgtgaaaacc |
35842126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 412
Target Start/End: Original strand, 35854591 - 35854634
Alignment:
| Q |
369 |
cgtttgtggttgtattcagtgtttacataggttatgtgaaaacc |
412 |
Q |
| |
|
|||||||||||| |||||||||| ||| |||||||||||||||| |
|
|
| T |
35854591 |
cgtttgtggttgaattcagtgttcacaaaggttatgtgaaaacc |
35854634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 412
Target Start/End: Original strand, 35869200 - 35869243
Alignment:
| Q |
369 |
cgtttgtggttgtattcagtgtttacataggttatgtgaaaacc |
412 |
Q |
| |
|
|||||||||||| |||||||||| ||| |||||||||||||||| |
|
|
| T |
35869200 |
cgtttgtggttgaattcagtgttcacaaaggttatgtgaaaacc |
35869243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 257 - 465
Target Start/End: Original strand, 3088063 - 3088271
Alignment:
| Q |
257 |
gtcttgactaacatcgccatcaccatccgttggaggtaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcatttggacctctt |
356 |
Q |
| |
|
||||||||||||||| |||| ||| ||| |||||| || ||||||| | |||||||||||| |||||||||||||||||||| | ||| | ||||||| |
|
|
| T |
3088063 |
gtcttgactaacatcaccattaccttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctctt |
3088162 |
T |
|
| Q |
357 |
gacttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaaacctctaaggtgaagaagttttgctagtttcaacaatggattgatat |
456 |
Q |
| |
|
|| || ||||| || ||||| |||||||| || || ||| ||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
3088163 |
gatttaagcaaacggttgtgattgtattcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatat |
3088262 |
T |
|
| Q |
457 |
ggccttgaa |
465 |
Q |
| |
|
| ||||||| |
|
|
| T |
3088263 |
gaccttgaa |
3088271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 245 - 465
Target Start/End: Original strand, 24104401 - 24104621
Alignment:
| Q |
245 |
aagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggtaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggca |
344 |
Q |
| |
|
||||| || |||||||||| ||||||| |||| || ||| |||||| || ||||||||| || ||||||||| |||| ||| |||||||||||| | | |
|
|
| T |
24104401 |
aagagggtatatgtcttgagtaacatcaccattgccttccattggagttagaccatctggtatggtctcaaagttaaagtcattgaaaccatcaagagaa |
24104500 |
T |
|
| Q |
345 |
tttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaaacctctaaggtgaagaagttttgctagtttcaaca |
444 |
Q |
| |
|
|| ||| ||||||| | |||||| |||||||| |||||||| ||||| || ||||||||||||| ||||||||||||||||| ||| ||||||| |||| |
|
|
| T |
24104501 |
ttaggatctcttgattcgagcaagcgtttgtgattgtattcggtgttcacgaaggttatgtgaaagcctctaaggtgaagaagctttcctagtttgaaca |
24104600 |
T |
|
| Q |
445 |
atggattgatatggccttgaa |
465 |
Q |
| |
|
||| ||||||||| ||||||| |
|
|
| T |
24104601 |
atgcattgatatgaccttgaa |
24104621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 279
Target Start/End: Complemental strand, 3492 - 3310
Alignment:
| Q |
97 |
gttcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagc |
196 |
Q |
| |
|
||||||||||||||||||||||||| | |||| | ||||| ||||||||||||||| | || |||||||||| || ||||||||| ||| || | |
|
|
| T |
3492 |
gttcttcagcagcttgtatggtaaatggcatgtaacaatcagcgactatgcaagtaacttgtggaacaagaccagcagtggcagagtcatgaagtttaac |
3393 |
T |
|
| Q |
197 |
aagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcac |
279 |
Q |
| |
|
||||||||| ||| || || | ||| ||| |||| || |||| | ||||| | ||||||||||| ||||||| ||||||| |
|
|
| T |
3392 |
aagaagttcattgaagggctgaaagaaattcgttcttatagattgaacaagagagggtatgtcttgagtaacatcaccatcac |
3310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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