View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10338_low_4 (Length: 402)
Name: NF10338_low_4
Description: NF10338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10338_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 71 - 388
Target Start/End: Original strand, 5892341 - 5892664
Alignment:
| Q |
71 |
tcaaaacattcctaccattaaaatcgtagttcattaaacctctttttactcgtaaaataagtattttgaataaaattcaagtattatttctgcctgatgc |
170 |
Q |
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| T |
5892341 |
tcaaaacattcctaccattaaaatcgtagttcattaaacctctttttacacgtaaaataagtattttgaataaaattcaagtattatttctgcctgatcc |
5892440 |
T |
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| Q |
171 |
tcaaatcaaaagtcaaagaaagtaatagtagtatcaacaacttctagatttttagtatgggaataa-------tcggtaccacgatatatataattttca |
263 |
Q |
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| T |
5892441 |
tcaaatcaaaa-tcaaagaaagtaatagtagtatcaacaacttctagatttttagtatgggaataatcgctagtcgctaccacgatatatataattttca |
5892539 |
T |
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| Q |
264 |
taaattttgagaccctatatatacacatgcattcatggtcttatttgtctcaaaattcatcaccaacaaatacttcaactctaaacatggaacaaaactt |
363 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5892540 |
taaactttgagaccctatatagacacatgcattcatggtcttatttgtctcaaaattcatcaccaacaaatacttcaactctaaacatggaacaaaactt |
5892639 |
T |
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| Q |
364 |
tcttctctacatcattttctctttc |
388 |
Q |
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|||||||||||||||||||||||| |
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| T |
5892640 |
ccttctctacatcattttctctttc |
5892664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 5892243 - 5892302
Alignment:
| Q |
14 |
aaaagaaatttccattatgtgtcgggt-caaacttttgtttgatatagatgtgtcgggtc |
72 |
Q |
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| T |
5892243 |
aaaagaaatttccattatgtgtcgggtccaaatttttgtttgatatagatgtgtcgggtc |
5892302 |
T |
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