View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10338_low_5 (Length: 395)
Name: NF10338_low_5
Description: NF10338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10338_low_5 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 15 - 395
Target Start/End: Complemental strand, 47727997 - 47727613
Alignment:
| Q |
15 |
atgaagtggctagtccaagaattgtggaagcaattaatgctgggtgtgtacctgtgattatttctcagaattattccttgcctttcaatgatgtgttgaa |
114 |
Q |
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| T |
47727997 |
atgaagtggctagtccaagaattgtggaagcaattaatgctgggtgtgtacctgtgattatttctcagaattattccttgcctttcaatgatgtgttgaa |
47727898 |
T |
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| Q |
115 |
ttggagtgaattttcagttgaaattccagtggagaaaatagtagagattaagaatatattacaaaatgttacaaaagataagtacatgaagttgcatatg |
214 |
Q |
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| T |
47727897 |
ttggagtgaattttcagttgaaattccagtggagaaaatagtagagattaagaatatattacaaaatgttacaaaagataagtacatgaagttgcatatg |
47727798 |
T |
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| Q |
215 |
aatgtgatgaaagttcaaaagcattttgttatgaataggcctgctaagccttttgatgtgatgcacatgatacttcattcaatttggcttagaagactta |
314 |
Q |
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| T |
47727797 |
aatgtgatgaaagttcaaaagcattttgttatgaataggcctgctaagccttttgatgtgatgcacatgatacttcattcaatttggcttagaagactta |
47727698 |
T |
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| Q |
315 |
atttcagactcattgattca----aaataaaataaaagttgtttctgcatgctgggtgtgtaactgtgatttttcaagtaattat |
395 |
Q |
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| T |
47727697 |
atttcagactcattgactcaaaataaataaaataaaagttgtttctgcatgctgggtgtgtaactgtgatttttcaagtaattat |
47727613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 47725825 - 47725653
Alignment:
| Q |
15 |
atgaagtggctagtccaagaattgtggaagcaattaatgctgggtgtgtacctgtgattatttctcagaattattccttgcctttcaatgatgtgttgaa |
114 |
Q |
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| T |
47725825 |
atgaagtggcaagtccaagagtggtggaagcaatttatgcaggatgtgtcccagtgataatttgtgacaattactctttgccttttagtgatgtgcttaa |
47725726 |
T |
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| Q |
115 |
ttggagtgaattttcagttgaaattccagtggagaaaatagtagagattaagaatatattacaaaatgttaca |
187 |
Q |
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| T |
47725725 |
ttggagtcaattctccatggaaattgcagttgatagaataccagaaattaagactattttacaaaatattaca |
47725653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 316
Target Start/End: Complemental strand, 47705090 - 47704975
Alignment:
| Q |
201 |
tgaagttgcatatgaatgtgatgaaagttcaaaagcattttgttatgaataggcctgctaagccttttgatgtgatgcacatgatacttcattcaatttg |
300 |
Q |
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| T |
47705090 |
tgaaattgcataggagggtgttgaaagttcaaagacattttgtgttgaatccaccagctaaaccatttgatgtgtttcatatgattcttcattcaatatg |
47704991 |
T |
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| Q |
301 |
gcttagaagacttaat |
316 |
Q |
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| T |
47704990 |
gcttagaagacttaat |
47704975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 49302300 - 49302357
Alignment:
| Q |
16 |
tgaagtggctagtccaagaattgtggaagcaattaatgctgggtgtgtacctgtgatt |
73 |
Q |
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| T |
49302300 |
tgaagtggctagcccaagaattgtggaatcaatttatgcagaatgtgtgcctgtgatt |
49302357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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