View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10338_low_9 (Length: 244)
Name: NF10338_low_9
Description: NF10338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10338_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 12175844 - 12175625
Alignment:
| Q |
1 |
ttctaagaaaggagggataattcatgttccctcttacaagttcattgctttcaatgctggaccaaggagttgtttgggtaaggatataagcttcattgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12175844 |
ttctaagaaaggagggataattcatgttccctcttacaagttcattgctttcaatgctggaccaaggagttgtttgggtaaggatataagcttcattgag |
12175745 |
T |
|
| Q |
101 |
atgaaaatggttgctatagcaatattgttaaattatcacattcaagtggtggaagatcatcccataatcccaagtgtttctgttgttttacacatgaaac |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12175744 |
atgaaaatggttgctatagcaatattgttgaattatcacattcaagtggtggaagatcatcccataatcccaagtctttctgttgttttacacatgaaac |
12175645 |
T |
|
| Q |
201 |
atggcttgaaggttaatgtc |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
12175644 |
atggcttgaaggttaatgtc |
12175625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 12164312 - 12164103
Alignment:
| Q |
8 |
aaaggagggataattcatgttccctcttacaagttcattgctttcaatgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaa |
107 |
Q |
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|||||||||||| || ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12164312 |
aaaggagggatagtttatgttccttcttacaagttcattgcttttaatgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaa |
12164213 |
T |
|
| Q |
108 |
tggttgctatagcaatattgttaaattatcacattcaagtggtggaagatcatcccataatcccaagtgtttctgttgttttacacatgaaacatggctt |
207 |
Q |
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| T |
12164212 |
tggttgctatagcaatattgttgaattatcacattcaagtggtggaagatcatcccataatcccaagtctttctgttgtcttacacatgaaacatggctt |
12164113 |
T |
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| Q |
208 |
gaaggttaat |
217 |
Q |
| |
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|||||||||| |
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| T |
12164112 |
gaaggttaat |
12164103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 36668171 - 36667952
Alignment:
| Q |
1 |
ttctaagaaaggagggataattcatgttccctcttacaagttcattgctttcaatgctggaccaaggagttgtttgggtaaggatataagcttcattgag |
100 |
Q |
| |
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||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36668171 |
ttctaagaaaggagggacaattcatgtaccttcttacaagttcattgctttcaatgctggaccaaggagtcgtttgggtaaggatataagcttcattgag |
36668072 |
T |
|
| Q |
101 |
atgaaaatggttgctatagcaatattgttaaattatcacattcaagtggtggaagatcatcccataatcccaagtgtttctgttgttttacacatgaaac |
200 |
Q |
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|||| ||||||||||||||||||||||| || |||||||||||||||||||||| |||||||| ||||||||| ||||||| || ||||| ||||| | |
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| T |
36668071 |
ttgaagatggttgctatagcaatattgttgaactatcacattcaagtggtggaaggccatcccattatcccaagtctttctgtcgtcttacatatgaagc |
36667972 |
T |
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| Q |
201 |
atggcttgaaggttaatgtc |
220 |
Q |
| |
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||||||||||| |||||||| |
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| T |
36667971 |
atggcttgaagattaatgtc |
36667952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 3321693 - 3321907
Alignment:
| Q |
1 |
ttctaagaaaggagggataattcatgttccctcttacaagttcattgctttcaatgctggaccaaggagttgtttgggtaaggatataagcttcattgag |
100 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || || ||||||||| |
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| T |
3321693 |
ttctaagaaaggagaaataattcatgtaccttcttacaagtttattgctttcaatgctggaccaaggagttgtttgggtaaggagatgagtttcattgag |
3321792 |
T |
|
| Q |
101 |
atgaaaatggttgctatagcaatattgttaaattatcacattcaagtggtggaagatcatcccataatcccaagtgtttctgttgttttacacatgaaac |
200 |
Q |
| |
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||||||||| || | |||||||| |||| |||||||| ||||| ||||| |||| ||| ||| |||||| ||||| | | |||||||||||| |
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| T |
3321793 |
atgaaaatgattattgtagcaatactgttgaattatcatattcatgtggttgaaggtcaagtagtaaagccaagtatttctttaatcctacacatgaaac |
3321892 |
T |
|
| Q |
201 |
atggcttgaaggtta |
215 |
Q |
| |
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||||||||||||||| |
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| T |
3321893 |
atggcttgaaggtta |
3321907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 13065381 - 13065468
Alignment:
| Q |
23 |
catgttccctcttacaagttcattgctttcaatgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatgg |
110 |
Q |
| |
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| T |
13065381 |
catgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatgg |
13065468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 13101024 - 13100937
Alignment:
| Q |
23 |
catgttccctcttacaagttcattgctttcaatgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggt |
111 |
Q |
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||||| || |||||||||||||| ||||||||| | ||||| || |||||| ||||||||||||| ||||||||| | ||||| ||||| |
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| T |
13101024 |
catgtaccatcttacaagttcatagctttcaat-caggacctagaagttgtatgggtaaggatattagcttcattcaaatgaagatggt |
13100937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 13007224 - 13007136
Alignment:
| Q |
23 |
catgttccctcttacaagttcattgctttcaatgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggt |
111 |
Q |
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||||| || |||||||||||||| ||||||||| | || || || |||||| |||| |||||||| ||||||||| | ||||| ||||| |
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| T |
13007224 |
catgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggt |
13007136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 13070344 - 13070432
Alignment:
| Q |
23 |
catgttccctcttacaagttcattgctttcaatgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggt |
111 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| | || || || |||||||||||||| ||| | || |||||| | ||||| ||||| |
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| T |
13070344 |
catgttccatcttacaagttcatagctttcaatacaggtccgagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggt |
13070432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 13204483 - 13204395
Alignment:
| Q |
23 |
catgttccctcttacaagttcattgctttcaatgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggt |
111 |
Q |
| |
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| T |
13204483 |
catgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggt |
13204395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 13244676 - 13244780
Alignment:
| Q |
10 |
aggagggataattcatgttccctcttacaagttcattgctttcaatgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatg |
109 |
Q |
| |
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||||||||| || |||| || |||||||||||||| ||||||||||| || || || |||||| | || || ||| | |||||| || | ||||||||| |
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| T |
13244676 |
aggagggattataaatgtaccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatg |
13244775 |
T |
|
| Q |
110 |
gttgc |
114 |
Q |
| |
|
||||| |
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|
| T |
13244776 |
gttgc |
13244780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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