View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10339_high_11 (Length: 236)

Name: NF10339_high_11
Description: NF10339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10339_high_11
NF10339_high_11
[»] chr8 (3 HSPs)
chr8 (107-231)||(11151303-11151427)
chr8 (1-45)||(11151261-11151305)
chr8 (23-79)||(11172945-11173001)


Alignment Details
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 107 - 231
Target Start/End: Original strand, 11151303 - 11151427
Alignment:
Q  107 atgtcttcattactgcacataaaattaatgtcaaatgaaaaaacatagaagaaaccctgtttcattacctggataacaattaaccaaactgtagaatata 206  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11151303 atgtcttcattactgaacataaaattaatgtcaaatgaaaaaacatagaagaaaccctgtttcattacctggataacaattaaccaaactgtagaatata 11151402  T
Q  207 tgcttttgaatttcacatttatagt 231  Q
    |||||||||||||||||||||||||    
T  11151403 tgcttttgaatttcacatttatagt 11151427  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11151261 - 11151305
Alignment:
Q  1 aaattaaaattaaactactaatattgatttgtggaattcttcatg 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  11151261 aaattaaaattaaactactaatattgatttgtggaattcttcatg 11151305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 11173001 - 11172945
Alignment:
Q  23 attgatttgtggaattcttcatgattgttatatgttacaactaacttcttcatatcc 79  Q
    |||| ||||||  ||| ||||||||||||||||||| | ||||||||||||| ||||    
T  11173001 attggtttgtgagattgttcatgattgttatatgtttccactaacttcttcagatcc 11172945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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