View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10339_high_13 (Length: 211)
Name: NF10339_high_13
Description: NF10339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10339_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 3e-93; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 5 - 193
Target Start/End: Complemental strand, 2449248 - 2449060
Alignment:
| Q |
5 |
gtggagaagcagagagcgatgataatggtggtgcgttcaactgtggctttctcaaaagcttcttggacaacttgttcggattcaaaatctagtgcacttg |
104 |
Q |
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| T |
2449248 |
gtggataagcggtgagcgatgataatggtggtgcgttcaactgtggctttctcaaaagcttcttggacaactcgttcggattcaaaatctagtgcacttg |
2449149 |
T |
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| Q |
105 |
ttgcttcgtctagcaatagaattcttggatttttgattatggctcttgcaatggaaatcctttgcttttgtccccctgacatttgtact |
193 |
Q |
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| T |
2449148 |
ttgcttcgtctagcaatagaattcttggatttttgattatggctcttgcaatggaaatcctttgcttttgtccccctgacatttgtact |
2449060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 2621466 - 2621282
Alignment:
| Q |
5 |
gtggagaagcagagagcgatgataatggtggtgcgttcaactgtggctttctcaaaagcttcttggacaacttgttcggattcaaaatctagtgcacttg |
104 |
Q |
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| T |
2621466 |
gtggataagcggtgagcgatgatgatggtggtgcgtccaacggtggctttgtctaaagcttcttggacaactctttcggattcagaatctagtgcacttg |
2621367 |
T |
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| Q |
105 |
ttgcttcgtctagcaatagaattcttggatttttgattatggctcttgcaatggaaatcctttgcttttgtccccctgacatttg |
189 |
Q |
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| T |
2621366 |
ttgcttcatctagcaaaagaatttttggcatttttatgatagctcttgcaatggaaatcctttgcttttgccccccagacatttg |
2621282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 2598318 - 2598493
Alignment:
| Q |
18 |
gagcgatgataatggtggtgcgttcaactgtggctttctcaaaagcttcttggacaacttgttcggattcaaaatctagtgcacttgttgcttcgtctag |
117 |
Q |
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|||||||||| |||||||||||| |||||| ||||| || | |||||||||||| ||| ||||||||||| |||| |||||||||||||||||||||| |
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| T |
2598318 |
gagcgatgatgatggtggtgcgtccaactgaagctttgtctagagcttcttggacgactcgttcggattcagaatcgagtgcacttgttgcttcgtctaa |
2598417 |
T |
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| Q |
118 |
caatagaattcttggatttttgattatggctcttgcaatggaaatcctttgcttttgtccccctgacatttgtact |
193 |
Q |
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| T |
2598418 |
caatagaatttttggcatttttatgatggctcttgcaattgcaattctttgcttttgtccccctgacatttgtact |
2598493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 2436069 - 2435885
Alignment:
| Q |
5 |
gtggagaagcagagagcgatgataatggtggtgcgttcaactgtggctttctcaaaagcttcttggacaacttgttcggattcaaaatctagtgcacttg |
104 |
Q |
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| T |
2436069 |
gtggataagcggtgagcgatgatgatggtggtgcgtccaactacagctttgtctagagcttcttggacaactcgttcagattcagaatcgagagcacttg |
2435970 |
T |
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| Q |
105 |
ttgcttcgtctagcaatagaattcttggatttttgattatggctcttgcaatggaaatcctttgcttttgtccccctgacatttg |
189 |
Q |
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||||||||||||||||||||||| |||| |||| | ||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
2435969 |
ttgcttcgtctagcaatagaatttttggcatttttactatggctcttgcaatggcaatcctttgcttttgtcccccagacatttg |
2435885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 2571565 - 2571736
Alignment:
| Q |
18 |
gagcgatgataatggtggtgcgttcaactgtggctttctcaaaagcttcttggacaacttgttcggattcaaaatctagtgcacttgttgcttcgtctag |
117 |
Q |
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|||||||||| |||||||| ||| |||||| ||||| || | |||||||||||| ||| ||||||||||| |||| |||||||||||||||||||||| |
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| T |
2571565 |
gagcgatgatgatggtggttcgtccaactgcagctttgtctagagcttcttggacgactcgttcggattcagaatcgagtgcacttgttgcttcgtctaa |
2571664 |
T |
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| Q |
118 |
caatagaattcttggatttttgattatggctcttgcaatggaaatcctttgcttttgtccccctgacatttg |
189 |
Q |
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|||||||||| |||| |||| || |||||||||||||| | ||| |||||||||||||||||||||||||| |
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| T |
2571665 |
caatagaatttttggcatttttatgatggctcttgcaattgcaattctttgcttttgtccccctgacatttg |
2571736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 2589886 - 2589711
Alignment:
| Q |
18 |
gagcgatgataatggtggtgcgttcaactgtggctttctcaaaagcttcttggacaacttgttcggattcaaaatctagtgcacttgttgcttcgtctag |
117 |
Q |
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|||||||||| |||||||||||| |||| || ||||| || | ||||||||||||||| ||| |||||| |||| ||||||||||||||||| ||||| |
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| T |
2589886 |
gagcgatgatgatggtggtgcgtccaacggtagctttgtctagagcttcttggacaaccctttctgattcagaatcgagtgcacttgttgcttcatctag |
2589787 |
T |
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| Q |
118 |
caatagaattcttggatttttgattatggctcttgcaatggaaatcctttgcttttgtccccctgacatttgtact |
193 |
Q |
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|||||||||| |||| |||| || || ||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
2589786 |
caatagaatttttggcatttttatgatagctcttgcaatggcaatcctttgcttttgcccccctgacatttgtact |
2589711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 2675056 - 2675224
Alignment:
| Q |
18 |
gagcgatgataatggtggtgcgttcaactgtggctttctcaaaagcttcttggacaacttgttcggattcaaaatctagtgcacttgttgcttcgtctag |
117 |
Q |
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|||||||||| |||||||||||| |||| | ||||| || | ||||||||| |||||| ||||||||||| |||| ||||||||||||||||| ||||| |
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| T |
2675056 |
gagcgatgatgatggtggtgcgtccaaccgccgctttgtctagagcttcttgaacaactcgttcggattcagaatcaagtgcacttgttgcttcatctag |
2675155 |
T |
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| Q |
118 |
caatagaattcttggatttttgattatggctcttgcaatggaaatcctttgcttttgtccccctgacat |
186 |
Q |
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|||| |||| | || |||| ||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
2675156 |
taataaaattttaggcatttttattatggctcttgcaatggcaatcctttgtttttgtccccctgacat |
2675224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 2643207 - 2643378
Alignment:
| Q |
18 |
gagcgatgataatggtggtgcgttcaactgtggctttctcaaaagcttcttggacaacttgttcggattcaaaatctagtgcacttgttgcttcgtctag |
117 |
Q |
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|
|||||||||| ||||| |||||| |||||| | |||| || | ||| |||||||||| | ||||||||||| |||| ||||||||||| |||||||| | |
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| T |
2643207 |
gagcgatgatgatggttgtgcgtccaactgcgactttgtctagagcgtcttggacaattcgttcggattcagaatcaagtgcacttgtcgcttcgtccaa |
2643306 |
T |
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| Q |
118 |
caatagaattcttggatttttgattatggctcttgcaatggaaatcctttgcttttgtccccctgacatttg |
189 |
Q |
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||||| |||| | || |||| ||||||||||||||||||| ||||||||| ||||| |||||||||||||| |
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| T |
2643307 |
caataaaattttaggcatttttattatggctcttgcaatggcaatcctttgtttttgcccccctgacatttg |
2643378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 33788367 - 33788455
Alignment:
| Q |
95 |
agtgcacttgttgcttcgtctagcaatagaattcttggatttttgattatggctcttgcaatggaaatcctttgcttttgtccccctga |
183 |
Q |
| |
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|||||||| |||||||| || |||| |||||| ||||||||| || || ||||||||||||| || |||||||||||||| ||||| |
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| T |
33788367 |
agtgcactagttgcttcatcaagcagaagaattactggattttttatgatagctcttgcaatggctattctttgcttttgtcctcctga |
33788455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 177
Target Start/End: Complemental strand, 5823595 - 5823515
Alignment:
| Q |
97 |
tgcacttgttgcttcgtctagcaatagaattcttggatttttgattatggctcttgcaatggaaatcctttgcttttgtcc |
177 |
Q |
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||||||||||||||| || || | || ||||||||||| || | |||||| |||||||| | ||| |||||||||||||| |
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| T |
5823595 |
tgcacttgttgcttcatcaagaagaaggattcttggattcttcaatatggcccttgcaattgcaattctttgcttttgtcc |
5823515 |
T |
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